| # | player | age | pos | ba | tbc+ | g | ab | r | h | 2b | 3b | hr | rbi | sb | cs | bb | so | hbp | sh | sf | ibb | gdp | tb | pa | xbh | 1b | avg | obp | slg | ops | seca | iso | babip | bb% | so% | so/bb | ab/hr | draft info | status | cur-org | cur-lev | hilvl | mlb years | stat years | year |
| 7 | Jose Reyes | 23 | SS | B | 111 | 153 | 647 | 122 | 194 | 30 | 17 | 19 | 81 | 64 | 17 | 53 | 81 | 1 | 0 | 0 | 6 | 6 | 315 | 701 | 66 | 128 | .300 | .354 | .487 | .841 | .342 | .187 | .320 | 7.56 | 11.55 | 1.53 | 34.05 | 1999- UDFA -NYN | premium | premium | premium | MLB | 2003-2018 | 2000-2018 | 2006 |
| 5 | David Wright | 23 | 3B | R | 116 | 154 | 582 | 96 | 181 | 40 | 5 | 26 | 116 | 20 | 5 | 66 | 113 | 5 | 0 | 8 | 13 | 15 | 309 | 661 | 71 | 110 | .311 | .381 | .531 | .912 | .359 | .220 | .344 | 9.98 | 17.10 | 1.71 | 22.38 | 2001- 1- 38-NYN | premium | premium | premium | MLB | 2004-2018 | 2001-2018 | 2006 |
| 21 | Carlos Delgado | 34 | 1B | L | 114 | 144 | 524 | 89 | 139 | 30 | 2 | 38 | 114 | 0 | 0 | 74 | 120 | 10 | 0 | 10 | 11 | 12 | 287 | 618 | 70 | 69 | .265 | .361 | .548 | .909 | .424 | .283 | .269 | 11.97 | 19.42 | 1.62 | 13.79 | 1988- UDFA -TOR | premium | premium | premium | MLB | 1993-2009 | 1989-2010 | 2006 |
| 16 | Paul Lo Duca | 34 | C | R | 103 | 124 | 512 | 80 | 163 | 39 | 1 | 5 | 49 | 3 | 0 | 24 | 38 | 6 | 7 | 2 | 0 | 15 | 219 | 551 | 45 | 118 | .318 | .355 | .428 | .783 | .162 | .110 | .335 | 4.36 | 6.90 | 1.58 | 102.40 | 1993- 25- 690-LAN | premium | premium | premium | MLB | 1998-2008 | 1993-2010 | 2006 |
| 15 | Carlos Beltran | 29 | CF | B | 125 | 140 | 510 | 127 | 140 | 38 | 1 | 41 | 116 | 18 | 3 | 95 | 99 | 4 | 1 | 7 | 6 | 6 | 303 | 617 | 80 | 60 | .275 | .388 | .594 | .982 | .535 | .319 | .263 | 15.40 | 16.05 | 1.04 | 12.44 | 1995- 2- 49-KCA | premium | premium | premium | MLB | 1998-2017 | 1995-2017 | 2006 |
| 18 | Jose Valentin | 36 | 2B | B | 104 | 137 | 384 | 56 | 104 | 24 | 3 | 18 | 62 | 6 | 2 | 37 | 71 | 0 | 5 | 6 | 5 | 5 | 188 | 432 | 45 | 59 | .271 | .330 | .490 | .820 | .326 | .219 | .286 | 8.56 | 16.44 | 1.92 | 21.33 | 1986- UDFA -SDN | premium | premium | premium | MLB | 1992-2007 | 1987-2008 | 2006 |
| 10 | Endy Chavez | 28 | RF-LF | L | 102 | 133 | 353 | 48 | 108 | 22 | 5 | 4 | 42 | 12 | 3 | 24 | 44 | 0 | 11 | 2 | 3 | 7 | 152 | 390 | 31 | 77 | .306 | .348 | .431 | .779 | .218 | .125 | .339 | 6.15 | 11.28 | 1.83 | 88.25 | 1996- UDFA -NYN | premium | premium | premium | MLB | 2001-2014 | 1997-2018 | 2006 |
| 30 | Cliff Floyd | 33 | LF | L | 97 | 97 | 332 | 45 | 81 | 19 | 1 | 11 | 44 | 6 | 0 | 29 | 58 | 12 | 0 | 3 | 3 | 5 | 135 | 376 | 31 | 50 | .244 | .324 | .407 | .731 | .268 | .163 | .263 | 7.71 | 15.43 | 2.00 | 30.18 | 1991- 1- 14-MON | premium | premium | premium | MLB | 1993-2009 | 1991-2009 | 2006 |
| 22 | Xavier Nady | 27 | RF | R | 102 | 75 | 265 | 37 | 70 | 15 | 1 | 14 | 40 | 2 | 1 | 19 | 51 | 6 | 1 | 1 | 4 | 7 | 129 | 292 | 30 | 40 | .264 | .326 | .487 | .813 | .298 | .223 | .279 | 6.51 | 17.47 | 2.68 | 18.93 | 2000- 2- 49-SDN | premium | premium | premium | MLB | 2000-2014 | 1998-2014 | 2006 |
| 4 | Chris Woodward | 30 | 2B | R | 79 | 83 | 222 | 25 | 48 | 10 | 1 | 3 | 25 | 1 | 1 | 23 | 55 | 1 | 4 | 3 | 2 | 2 | 69 | 253 | 14 | 34 | .216 | .289 | .311 | .600 | .198 | .095 | .269 | 9.09 | 21.74 | 2.39 | 74.00 | 1994- 54-1438-TOR | premium | premium | premium | MLB | 1999-2011 | 1995-2012 | 2006 |
| 44 | Lastings Milledge | 21 | LF-RF | R | 88* | 56 | 166 | 14 | 40 | 7 | 2 | 4 | 22 | 1 | 2 | 12 | 39 | 5 | 1 | 1 | 4 | 4 | 63 | 185 | 13 | 27 | .241 | .310 | .380 | .690 | .205 | .139 | .290 | 6.49 | 21.08 | 3.25 | 41.50 | 2003- 1- 12-NYN | premium | premium | premium | MLB | 2006-2011 | 2003-2017 | 2006 |
| 23 | Julio Franco | 47 | 1B | R | 93* | 95 | 165 | 14 | 45 | 10 | 0 | 2 | 26 | 6 | 1 | 13 | 49 | 1 | 0 | 0 | 2 | 11 | 61 | 179 | 12 | 33 | .273 | .330 | .370 | .700 | .206 | .097 | .377 | 7.26 | 27.37 | 3.77 | 82.50 | 1978- UDFA -PHI | premium | premium | premium | MLB | 1982-2007 | 1978-2014 | 2006 |
| 25 | Kazuo Matsui | 30 | 2B | B | 92 | 38 | 130 | 10 | 26 | 6 | 0 | 1 | 7 | 2 | 0 | 6 | 19 | 0 | 0 | 0 | 1 | 1 | 35 | 136 | 7 | 19 | .200 | .235 | .269 | .504 | .131 | .069 | .227 | 4.41 | 13.97 | 3.17 | 130.00 | 2003- UDFA -NYN | premium | premium | premium | MLB | 2004-2010 | 1995-2018 | 2006 |
| 11 | Ramon Castro | 30 | C | R | 93* | 40 | 126 | 13 | 30 | 7 | 0 | 4 | 12 | 0 | 0 | 15 | 40 | 1 | 1 | 1 | 2 | 2 | 49 | 144 | 11 | 19 | .238 | .322 | .389 | .711 | .270 | .151 | .313 | 10.42 | 27.78 | 2.67 | 31.50 | 1994- 1- 17-HOU | premium | premium | premium | MLB | 1999-2011 | 1994-2013 | 2006 |
| 20 | Shawn Green | 33 | RF | L | 101 | 34 | 113 | 14 | 29 | 9 | 0 | 4 | 15 | 0 | 0 | 8 | 18 | 4 | 0 | 1 | 1 | 8 | 50 | 126 | 13 | 16 | .257 | .325 | .442 | .767 | .257 | .185 | .272 | 6.35 | 14.29 | 2.25 | 28.25 | 1991- 1- 16-TOR | premium | premium | premium | MLB | 1993-2007 | 1992-2007 | 2006 |
| 1 | Anderson Hernandez | 23 | 2B-SS | B | 25 | 66 | 4 | 10 | 1 | 1 | 1 | 3 | 0 | 0 | 1 | 12 | 0 | 0 | 0 | 0 | 3 | 16 | 67 | 3 | 7 | .152 | .164 | .242 | .406 | .106 | .090 | .170 | 1.49 | 17.91 | 12.00 | 66.00 | 2001- UDFA -DET | premium | premium | premium | MLB | 2005-2010 | 2001-2018 | 2006 | |
| 22 | Michael Tucker | 35 | LF | L | 35 | 56 | 3 | 11 | 4 | 0 | 1 | 6 | 2 | 0 | 16 | 14 | 1 | 0 | 1 | 0 | 2 | 18 | 74 | 5 | 6 | .196 | .378 | .321 | .699 | .446 | .125 | .238 | 21.62 | 18.92 | 0.88 | 56.00 | 1992- 1- 10-KCA | premium | premium | premium | MLB | 1995-2006 | 1993-2009 | 2006 | |
| 47 | Tom Glavine | 40 | P | L | 30 | 53 | 6 | 9 | 1 | 0 | 0 | 2 | 0 | 0 | 7 | 18 | 0 | 10 | 0 | 0 | 2 | 10 | 70 | 1 | 8 | .170 | .267 | .189 | .456 | .151 | .019 | .257 | 10.00 | 25.71 | 2.57 | 0.00 | 1984- 2- 47-ATL | premium | premium | premium | MLB | 1987-2008 | 1984-2009 | 2006 | |
| 29 | Steve Trachsel | 35 | P | R | 28 | 50 | 4 | 7 | 1 | 0 | 1 | 2 | 0 | 0 | 4 | 13 | 1 | 4 | 0 | 0 | 0 | 11 | 59 | 2 | 5 | .140 | .218 | .220 | .438 | .160 | .080 | .167 | 6.78 | 22.03 | 3.25 | 50.00 | 1991- 8- 215-CHN | premium | premium | premium | MLB | 1993-2008 | 1991-2008 | 2006 | |
| 45 | Pedro Martinez | 34 | P | R | 22 | 38 | 2 | 4 | 1 | 0 | 0 | 1 | 0 | 0 | 2 | 16 | 0 | 9 | 0 | 0 | 0 | 5 | 49 | 1 | 3 | .105 | .150 | .132 | .282 | .079 | .027 | .182 | 4.08 | 32.65 | 8.00 | 0.00 | 1988- UDFA -LAN | premium | premium | premium | MLB | 1992-2009 | 1990-2009 | 2006 | |
| 26 | Orlando Hernandez | 40 | P | R | 18 | 35 | 4 | 5 | 0 | 1 | 0 | 2 | 1 | 0 | 0 | 10 | 0 | 2 | 0 | 0 | 0 | 7 | 37 | 1 | 4 | .143 | .143 | .200 | .343 | .086 | .057 | .200 | 0.00 | 27.03 | 0.00 | 0.00 | 1998- UDFA -NYA | premium | premium | premium | MLB | 1998-2007 | 1998-2010 | 2006 | |
| 32 | Eli Marrero | 32 | LF-RF | R | 102* | 25 | 33 | 4 | 6 | 1 | 0 | 2 | 5 | 2 | 0 | 4 | 15 | 1 | 2 | 1 | 0 | 0 | 13 | 41 | 3 | 3 | .182 | .282 | .394 | .676 | .394 | .212 | .235 | 9.76 | 36.59 | 3.75 | 16.50 | 1993- 3- 88-SLN | premium | premium | premium | MLB | 1997-2006 | 1993-2007 | 2006 |
| 9 | Ricky Ledee | 32 | RF-LF | L | 27 | 32 | 4 | 3 | 1 | 0 | 1 | 1 | 0 | 0 | 4 | 6 | 0 | 0 | 0 | 0 | 0 | 7 | 36 | 2 | 1 | .094 | .194 | .219 | .413 | .250 | .125 | .080 | 11.11 | 16.67 | 1.50 | 32.00 | 1990- 16- 435-NYA | premium | premium | premium | MLB | 1998-2007 | 1990-2007 | 2006 | |
| 33 | John Maine | 25 | P | R | 16 | 28 | 3 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 16 | 1 | 3 | 0 | 0 | 0 | 2 | 32 | 1 | 0 | .036 | .069 | .071 | .140 | .036 | .035 | .083 | 0.00 | 50.00 | 0.00 | 0.00 | 2002- 6- 166-BAL | premium | premium | premium | MLB | 2004-2013 | 2000-2013 | 2006 | |
| 6 | Mike DiFelice | 37 | C | R | 15 | 25 | 3 | 2 | 1 | 0 | 0 | 1 | 0 | 0 | 5 | 10 | 0 | 0 | 0 | 0 | 0 | 3 | 30 | 1 | 1 | .080 | .233 | .120 | .353 | .240 | .040 | .133 | 16.67 | 33.33 | 2.00 | 0.00 | 1991- 11- 285-SLN | premium | premium | premium | MLB | 1996-2008 | 1989-2008 | 2006 | |
| # | player | age | pos | ba | tbc+ | g | ab | r | h | 2b | 3b | hr | rbi | sb | cs | bb | so | hbp | sh | sf | ibb | gdp | tb | pa | xbh | 1b | avg | obp | slg | ops | seca | iso | babip | bb% | so% | so/bb | ab/hr | draft info | status | cur-org | cur-lev | hilvl | mlb years | stat years | year |
| 27 | Darren Oliver | 35 | P | R | 43 | 15 | 2 | 2 | 1 | 0 | 0 | 2 | 0 | 0 | 1 | 7 | 0 | 0 | 0 | 0 | 0 | 3 | 16 | 1 | 1 | .133 | .188 | .200 | .388 | .133 | .067 | .250 | 6.25 | 43.75 | 7.00 | 0.00 | 1988- 3- 63-TEX | premium | premium | premium | MLB | 1993-2013 | 1988-2013 | 2006 | |
| 46 | Oliver Perez | 24 | P | L | 7 | 13 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 4 | 0 | 0 | 0 | 0 | 1 | 1 | 15 | 0 | 1 | .077 | .200 | .077 | .277 | .154 | .000 | .111 | 13.33 | 26.67 | 2.00 | 0.00 | 1999- UDFA -SDN | premium | premium | premium | MLB | 2002-2022 | 1999-2023 | 2006 | |
| 40 | Brian Bannister | 25 | P | R | 8 | 12 | 2 | 4 | 3 | 0 | 0 | 2 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 7 | 13 | 3 | 1 | .333 | .333 | .583 | .916 | .250 | .250 | .444 | 0.00 | 23.08 | 0.00 | 0.00 | 2003- 7- 199-NYN | premium | premium | premium | MLB | 2006-2010 | 2000-2010 | 2006 | |
| 36 | Kelly Stinnett | 36 | C | R | 7 | 12 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 1 | 12 | 0 | 1 | .083 | .083 | .083 | .166 | .000 | .000 | .125 | 0.00 | 33.33 | 0.00 | 0.00 | 1989- 11- 281-CLE | premium | premium | premium | MLB | 1994-2007 | 1990-2007 | 2006 | |
| 59 | Alay Soler | 26 | P | R | 6 | 11 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 4 | 0 | 0 | 0 | 1 | 15 | 0 | 1 | .091 | .091 | .091 | .182 | .000 | .000 | .200 | 0.00 | 40.00 | 0.00 | 0.00 | 2004- UDFA -NYN | premium | premium | premium | MLB | 2006-2006 | 2006-2009 | 2006 | |
| 20 | Victor Diaz | 24 | LF | R | 6 | 11 | 0 | 2 | 1 | 0 | 0 | 2 | 0 | 0 | 0 | 5 | 0 | 0 | 0 | 0 | 0 | 3 | 11 | 1 | 1 | .182 | .182 | .273 | .455 | .091 | .091 | .333 | 0.00 | 45.45 | 0.00 | 0.00 | 2000- 37-1107-LAN | premium | premium | premium | MLB | 2004-2007 | 2001-2015 | 2006 | |
| 34 | Mike Pelfrey | 22 | P | R | 4 | 9 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 0 | 0 | 0 | 0 | 0 | 0 | 9 | 0 | 0 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | 0.00 | 44.44 | 0.00 | 0.00 | 2005- 1- 9-NYN | premium | premium | premium | MLB | 2006-2017 | 2003-2017 | 2006 | |
| 32 | Dave Williams | 27 | P | L | 6 | 9 | 1 | 2 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 4 | 0 | 0 | 0 | 0 | 0 | 2 | 11 | 0 | 2 | .222 | .364 | .222 | .586 | .222 | .000 | .400 | 18.18 | 36.36 | 2.00 | 0.00 | 1998- 17- 508-PIT | premium | premium | premium | MLB | 2001-2007 | 1998-2011 | 2006 | |
| 17 | Jose Lima | 33 | P | R | 4 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 1 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | 0.00 | 50.00 | 0.00 | 0.00 | 1989- UDFA -DET | premium | premium | premium | MLB | 1994-2006 | 1990-2009 | 2006 | |
| 38 | Victor Zambrano | 30 | P | B | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | .000 | .167 | .000 | .167 | .000 | .000 | .000 | 0.00 | 16.67 | 0.00 | 0.00 | 1993- UDFA -NYA | premium | premium | premium | MLB | 2001-2007 | 1994-2010 | 2006 | |
| 32 | Geremi Gonzalez | 31 | P | R | 3 | 3 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 6 | 0 | 0 | .000 | .250 | .000 | .250 | .333 | .000 | .000 | 16.67 | 16.67 | 1.00 | 0.00 | 1991- UDFA -CHN | premium | premium | premium | MLB | 1997-2006 | 1992-2007 | 2006 | |
| 25,39 | Pedro Feliciano | 29 | P | L | 61 | 3 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | 0.00 | 33.33 | 0.00 | 0.00 | 1995- 31- 863-LAN | premium | premium | premium | MLB | 2002-2013 | 1995-2014 | 2006 | |
| 50 | Duaner Sanchez | 26 | P | R | 45 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 0 | 0 | 2 | 0 | 0 | .000 | .500 | .000 | .500 | .000 | .000 | .000 | 0.00 | 50.00 | 0.00 | 0.00 | 1996- UDFA -ARI | premium | premium | premium | MLB | 2002-2009 | 1999-2011 | 2006 | |
| 34 | Jorge Julio | 27 | P | R | 18 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | 0.00 | 100.00 | 0.00 | 0.00 | 1996- UDFA -MON | premium | premium | premium | MLB | 2001-2009 | 1997-2012 | 2006 | |
| 19 | Heath Bell | 28 | P | R | 19 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | .000 | .000 | .000 | .000 | .000 | .000 | .000 | 0.00 | 100.00 | 0.00 | 0.00 | 1997- 69-1583-TBA | premium | premium | premium | MLB | 2004-2014 | 1998-2014 | 2006 | |
| Totals: | 1986 | 5558 | 834 | 1469 | 323 | 41 | 200 | 800 | 146 | 35 | 547 | 1071 | 62 | 69 | 47 | 63 | 114 | 2474 | 6283 | 564 | 905 | .264 | .334 | .445 | .780 | .299 | .181 | .293 | 8.71 | 17.05 | 1.96 | 27.79 | premium | premium | premium |
| # | player | age | th | w | l | era | g | gs | cg | sho | gr | gf | sv | ip | h | r | er | hr | bb | so | wp | bk | hb | whip | h9 | hr9 | bb9 | so9 | ra9 | so/bb | draft info | status | cur-org | cur-lev | hilvl | mlb years | stat years | year |
| 33 | John Maine | 25 | R | 6 | 5 | 3.60 | 16 | 15 | 1 | 1 | 1 | 1 | 0 | 90.0 | 69 | 40 | 36 | 15 | 33 | 71 | 3 | 0 | 0 | 1.13 | 6.90 | 1.50 | 3.30 | 7.10 | 4.00 | 2.15 | 2002- 6- 166-BAL | premium | premium | premium | MLB | 2004-2013 | 2000-2013 | 2006 |
| 48 | Aaron Heilman | 27 | R | 4 | 5 | 3.62 | 74 | 0 | 0 | 0 | 74 | 14 | 0 | 87.0 | 73 | 37 | 35 | 5 | 28 | 73 | 5 | 0 | 3 | 1.16 | 7.55 | 0.52 | 2.90 | 7.55 | 3.83 | 2.61 | 2001- 1- 18-NYN | premium | premium | premium | MLB | 2003-2011 | 1998-2012 | 2006 |
| 27 | Darren Oliver | 35 | L | 4 | 1 | 3.44 | 45 | 0 | 0 | 0 | 45 | 10 | 0 | 81.0 | 70 | 33 | 31 | 13 | 21 | 60 | 1 | 0 | 0 | 1.12 | 7.78 | 1.44 | 2.33 | 6.67 | 3.67 | 2.86 | 1988- 3- 63-TEX | premium | premium | premium | MLB | 1993-2013 | 1988-2013 | 2006 |
| 13 | Billy Wagner | 34 | L | 3 | 2 | 2.24 | 70 | 0 | 0 | 0 | 70 | 59 | 40 | 72.1 | 59 | 22 | 18 | 7 | 21 | 94 | 2 | 0 | 0 | 1.11 | 7.34 | 0.87 | 2.61 | 11.70 | 2.74 | 4.48 | 1993- 1- 12-HOU | premium | premium | premium | MLB | 1995-2010 | 1993-2010 | 2006 |
| 53 | Chad Bradford | 31 | R | 4 | 2 | 2.90 | 70 | 0 | 0 | 0 | 70 | 15 | 2 | 62.0 | 59 | 22 | 20 | 1 | 13 | 45 | 0 | 0 | 0 | 1.16 | 8.56 | 0.15 | 1.89 | 6.53 | 3.19 | 3.46 | 1996- 13- 377-CHA | premium | premium | premium | MLB | 1998-2009 | 1996-2009 | 2006 |
| 25,39 | Pedro Feliciano | 29 | L | 7 | 2 | 2.09 | 64 | 0 | 0 | 0 | 64 | 10 | 0 | 60.1 | 56 | 15 | 14 | 4 | 20 | 54 | 1 | 0 | 3 | 1.26 | 8.35 | 0.60 | 2.98 | 8.06 | 2.24 | 2.70 | 1995- 31- 863-LAN | premium | premium | premium | MLB | 2002-2013 | 1995-2014 | 2006 |
| 50 | Duaner Sanchez | 26 | R | 5 | 1 | 2.60 | 49 | 0 | 0 | 0 | 49 | 15 | 0 | 55.1 | 43 | 19 | 16 | 3 | 24 | 44 | 1 | 0 | 0 | 1.21 | 6.99 | 0.49 | 3.90 | 7.16 | 3.09 | 1.83 | 1996- UDFA -ARI | premium | premium | premium | MLB | 2002-2009 | 1999-2011 | 2006 |
| 59 | Alay Soler | 26 | R | 2 | 3 | 6.00 | 8 | 8 | 1 | 1 | 0 | 0 | 0 | 45.0 | 50 | 33 | 30 | 7 | 21 | 23 | 3 | 0 | 0 | 1.58 | 10.00 | 1.40 | 4.20 | 4.60 | 6.60 | 1.10 | 2004- UDFA -NYN | premium | premium | premium | MLB | 2006-2006 | 2006-2009 | 2006 |
| 36 | Henry Owens | 27 | R | 0 | 0 | 9.00 | 3 | 0 | 0 | 0 | 3 | 1 | 0 | 4.0 | 4 | 4 | 4 | 0 | 4 | 2 | 0 | 0 | 0 | 2.00 | 9.00 | 0.00 | 9.00 | 4.50 | 9.00 | 0.50 | 2001- UDFA -PIT | premium | premium | premium | MLB | 2006-2007 | 2001-2009 | 2006 |
| 40 | Brian Bannister | 25 | R | 2 | 1 | 4.26 | 8 | 6 | 0 | 0 | 2 | 1 | 0 | 38.0 | 34 | 18 | 18 | 4 | 22 | 19 | 2 | 0 | 2 | 1.47 | 8.05 | 0.95 | 5.21 | 4.50 | 4.26 | 0.86 | 2003- 7- 199-NYN | premium | premium | premium | MLB | 2006-2010 | 2000-2010 | 2006 |
| 19 | Heath Bell | 28 | R | 0 | 0 | 5.11 | 22 | 0 | 0 | 0 | 22 | 6 | 0 | 37.0 | 51 | 25 | 21 | 6 | 11 | 35 | 1 | 0 | 0 | 1.68 | 12.41 | 1.46 | 2.68 | 8.51 | 6.08 | 3.18 | 1997- 69-1583-TBA | premium | premium | premium | MLB | 2004-2014 | 1998-2014 | 2006 |
| 46 | Oliver Perez | 24 | L | 1 | 3 | 6.38 | 7 | 7 | 1 | 1 | 0 | 0 | 0 | 36.2 | 41 | 26 | 26 | 7 | 17 | 41 | 1 | 0 | 0 | 1.58 | 10.06 | 1.72 | 4.17 | 10.06 | 6.38 | 2.41 | 1999- UDFA -SDN | premium | premium | premium | MLB | 2002-2022 | 1999-2023 | 2006 |
| 43 | Bartolome Fortunato | 31 | R | 1 | 0 | 27.00 | 2 | 0 | 0 | 0 | 2 | 0 | 0 | 3.0 | 7 | 9 | 9 | 2 | 2 | 0 | 0 | 0 | 1 | 3.00 | 21.00 | 6.00 | 6.00 | 0.00 | 27.00 | 0.00 | 1996- UDFA -TBA | premium | premium | premium | MLB | 2004-2006 | 2000-2011 | 2006 |
| 32 | Dave Williams | 27 | L | 3 | 1 | 5.59 | 6 | 5 | 0 | 0 | 1 | 1 | 0 | 29.0 | 39 | 18 | 18 | 5 | 4 | 16 | 1 | 0 | 0 | 1.48 | 12.10 | 1.55 | 1.24 | 4.97 | 5.59 | 4.00 | 1998- 17- 508-PIT | premium | premium | premium | MLB | 2001-2007 | 1998-2011 | 2006 |
| 38 | Victor Zambrano | 30 | R | 1 | 2 | 6.75 | 5 | 5 | 0 | 0 | 0 | 0 | 0 | 21.1 | 25 | 16 | 16 | 5 | 11 | 15 | 1 | 0 | 0 | 1.69 | 10.55 | 2.11 | 4.64 | 6.33 | 6.75 | 1.36 | 1993- UDFA -NYA | premium | premium | premium | MLB | 2001-2007 | 1994-2010 | 2006 |
| 34 | Mike Pelfrey | 22 | R | 2 | 1 | 5.48 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 21.1 | 25 | 14 | 13 | 1 | 12 | 13 | 2 | 0 | 0 | 1.73 | 10.55 | 0.42 | 5.06 | 5.48 | 5.91 | 1.08 | 2005- 1- 9-NYN | premium | premium | premium | MLB | 2006-2017 | 2003-2017 | 2006 |
| 34 | Jorge Julio | 27 | R | 1 | 2 | 5.06 | 18 | 0 | 0 | 0 | 18 | 12 | 1 | 21.1 | 21 | 15 | 12 | 4 | 10 | 33 | 2 | 0 | 1 | 1.45 | 8.86 | 1.69 | 4.22 | 13.92 | 6.33 | 3.30 | 1996- UDFA -MON | premium | premium | premium | MLB | 2001-2009 | 1997-2012 | 2006 |
| 39,49 | Roberto Hernandez | 41 | R | 0 | 0 | 3.48 | 22 | 0 | 0 | 0 | 22 | 5 | 0 | 20.2 | 15 | 8 | 8 | 2 | 8 | 15 | 2 | 0 | 0 | 1.11 | 6.53 | 0.87 | 3.48 | 6.53 | 3.48 | 1.88 | 1986- 1- 16-CAL | premium | premium | premium | MLB | 1991-2007 | 1986-2007 | 2006 |
| 49 | Philip Humber | 23 | R | 0 | 0 | 0.00 | 2 | 0 | 0 | 0 | 2 | 1 | 0 | 2.0 | 0 | 0 | 0 | 0 | 1 | 2 | 0 | 0 | 0 | 0.50 | 0.00 | 0.00 | 4.50 | 9.00 | 0.00 | 2.00 | 2004- 1- 3-NYN | premium | premium | premium | MLB | 2006-2013 | 2002-2014 | 2006 |
| 47 | Tom Glavine | 40 | L | 15 | 7 | 3.82 | 32 | 32 | 0 | 0 | 0 | 0 | 0 | 198.0 | 202 | 94 | 84 | 22 | 62 | 131 | 1 | 0 | 6 | 1.33 | 9.18 | 1.00 | 2.82 | 5.95 | 4.27 | 2.11 | 1984- 2- 47-ATL | premium | premium | premium | MLB | 1987-2008 | 1984-2009 | 2006 |
| 49 | Guillermo Mota | 32 | R | 3 | 0 | 1.00 | 18 | 0 | 0 | 0 | 18 | 4 | 0 | 18.0 | 10 | 2 | 2 | 2 | 5 | 19 | 0 | 0 | 0 | 0.83 | 5.00 | 1.00 | 2.50 | 9.50 | 1.00 | 3.80 | 1990- UDFA -NYN | premium | premium | premium | MLB | 1999-2012 | 1993-2012 | 2006 |
| 17 | Jose Lima | 33 | R | 0 | 4 | 9.87 | 4 | 4 | 0 | 0 | 0 | 0 | 0 | 17.1 | 25 | 22 | 19 | 3 | 10 | 12 | 1 | 1 | 2 | 2.02 | 12.98 | 1.56 | 5.19 | 6.23 | 11.42 | 1.20 | 1989- UDFA -DET | premium | premium | premium | MLB | 1994-2006 | 1990-2009 | 2006 |
| 29 | Steve Trachsel | 35 | R | 15 | 8 | 4.97 | 30 | 30 | 1 | 0 | 0 | 0 | 0 | 164.2 | 185 | 94 | 91 | 23 | 78 | 79 | 4 | 0 | 0 | 1.60 | 10.11 | 1.26 | 4.26 | 4.32 | 5.14 | 1.01 | 1991- 8- 215-CHN | premium | premium | premium | MLB | 1993-2008 | 1991-2008 | 2006 |
| 32 | Geremi Gonzalez | 31 | R | 0 | 0 | 7.71 | 3 | 3 | 0 | 0 | 0 | 0 | 0 | 14.0 | 21 | 12 | 12 | 4 | 6 | 8 | 0 | 0 | 0 | 1.93 | 13.50 | 2.57 | 3.86 | 5.14 | 7.71 | 1.33 | 1991- UDFA -CHN | premium | premium | premium | MLB | 1997-2006 | 1992-2007 | 2006 |
| 45 | Pedro Martinez | 34 | R | 9 | 8 | 4.48 | 23 | 23 | 0 | 0 | 0 | 0 | 0 | 132.2 | 108 | 72 | 66 | 19 | 39 | 137 | 2 | 1 | 0 | 1.11 | 7.33 | 1.29 | 2.65 | 9.29 | 4.88 | 3.51 | 1988- UDFA -LAN | premium | premium | premium | MLB | 1992-2009 | 1990-2009 | 2006 |
| # | player | age | th | w | l | era | g | gs | cg | sho | gr | gf | sv | ip | h | r | er | hr | bb | so | wp | bk | hb | whip | h9 | hr9 | bb9 | so9 | ra9 | so/bb | draft info | status | cur-org | cur-lev | hilvl | mlb years | stat years | year |
| 43 | Royce Ring | 25 | L | 0 | 0 | 2.13 | 11 | 0 | 0 | 0 | 11 | 2 | 0 | 12.2 | 7 | 3 | 3 | 2 | 3 | 8 | 0 | 0 | 0 | 0.79 | 4.97 | 1.42 | 2.13 | 5.68 | 2.13 | 2.67 | 2002- 1- 18-CHA | premium | premium | premium | MLB | 2005-2010 | 2000-2013 | 2006 |
| 26 | Orlando Hernandez | 40 | R | 9 | 7 | 4.09 | 20 | 20 | 1 | 0 | 0 | 0 | 0 | 116.2 | 103 | 58 | 53 | 14 | 41 | 112 | 1 | 3 | 8 | 1.23 | 7.95 | 1.08 | 3.16 | 8.64 | 4.47 | 2.73 | 1998- UDFA -NYA | premium | premium | premium | MLB | 1998-2007 | 1998-2010 | 2006 |
| Totals: | 97 | 65 | 4.16 | 636 | 162 | 5 | 3 | 157 | 474 | 43 | 1461.1 | 1402 | 731 | 675 | 180 | 527 | 1161 | 37 | 5 | 26 | 1.32 | 8.63 | 1.11 | 3.25 | 7.15 | 4.50 | 2.20 | premium | premium | premium |