| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | ARI | Arizona Diamondbacks | MLB-NL | MLB | team page | 162 | 76 | 86 | 12.0 | 773 | 788 | -15 | 4 | 11 | Bob Melvin | Chase Field | dnq |
| 2006 | ARI | Tucson Sidewinders | PCL | AAA | team page | 144 | 91 | 53 | -- | 844 | 627 | 217 | 1 | 1 | Chip Hale | Tucson Electric Park | League Champions |
| 2006 | ARI | Tennessee Smokies | Sou | AA | team page | 139 | 70 | 69 | 10.5 | 604 | 548 | 56 | 3 | 5 | Bill Plummer | Smokies Stadium | - |
| 2006 | ARI | Lancaster JetHawks | Calif | A+ | team page | 140 | 68 | 72 | 6.0 | 872 | 891 | -19 | 4 | 7 | Brett Butler | Clear Channel Stadium | - |
| 2006 | ARI | South Bend Silver Hawks | Midw | A | team page | 136 | 74 | 62 | 14.5 | 627 | 629 | -2 | 2 | 4 | Mark Haley | Stanley Covelski Regional Stadium | Lost in 1st Round |
| 2006 | ARI | Yakima Bears | Nwst | A- | team page | 76 | 28 | 48 | 16.0 | 318 | 369 | -51 | 3 | 7 | Jay Gainer | Yakima County Stadium | dnq |
| 2006 | ARI | Missoula Osprey | Pio | Rk | team page | 76 | 42 | 34 | 9.0 | 408 | 364 | 44 | 2 | 3 | Hector De La Cruz | Ogren Park at Allegiance Field | League Champions |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | ATL | Atlanta Braves | MLB-NL | MLB | team page | 162 | 79 | 83 | 18.0 | 849 | 805 | 44 | 3 | 8 | Bobby Cox | Turner Field | dnq |
| 2006 | ATL | Richmond Braves | IL | AAA | team page | 143 | 57 | 86 | 23.0 | 510 | 654 | -144 | 4 | 14 | Brian Snitker | The Diamond | - |
| 2006 | ATL | Mississippi Braves | Sou | AA | team page | 138 | 58 | 80 | 27.0 | 492 | 604 | -112 | 5 | 10 | Jeff Blauser | Trustmark Park | - |
| 2006 | ATL | Myrtle Beach Pelicans | Caro | A+ | team page | 140 | 72 | 68 | 13.5 | 599 | 673 | -74 | 3 | 3 | Rocket Wheeler | BB&T Coastal Field | - |
| 2006 | ATL | Rome Braves | SAL | A | team page | 139 | 71 | 68 | 21.0 | 645 | 665 | -20 | 5 | 8 | Randy Ingle | State Mutual Stadium | Lost in 1st Round |
| 2006 | ATL | Danville Braves | App | Rk | team page | 67 | 40 | 27 | -- | 380 | 286 | 94 | 1 | 2 | Paul Runge | American Legion Field | League Champions |
| 2006 | ATL | Gulf Coast Braves | GCL | Rk | team page | 50 | 23 | 27 | 9.0 | 213 | 224 | -11 | 4 | 8 | Luis Ortiz | Cracker Jack Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | BAL | Baltimore Orioles | MLB-AL | MLB | team page | 162 | 70 | 92 | 27.0 | 768 | 899 | -131 | 4 | 12 | Sam Perlozzo | Oriole Park at Camden Yards | dnq |
| 2006 | BAL | Ottawa Lynx | IL | AAA | team page | 143 | 74 | 69 | 10.5 | 589 | 557 | 32 | 3 | 8 | Dave Trembley | Lynx Stadium | - |
| 2006 | BAL | Bowie Baysox | East | AA | team page | 141 | 67 | 74 | 19.5 | 589 | 587 | 2 | 4 | 8 | Don Werner | Prince George's Stadium | - |
| 2006 | BAL | Frederick Keys | Caro | A+ | team page | 138 | 61 | 77 | 6.0 | 637 | 711 | -74 | 4 | 8 | Bien Figueroa | Harry Grove Stadium | Lost in finals |
| 2006 | BAL | Delmarva Shorebirds | SAL | A | team page | 137 | 64 | 73 | 19.0 | 581 | 623 | -42 | 6 | 12 | Gary Kendall | Arthur W. Perdue Stadium | - |
| 2006 | BAL | Aberdeen IronBirds | NYPL | A- | team page | 74 | 41 | 33 | 4.0 | 309 | 285 | 24 | 3 | 4 | Andy Etchebarren | Ripken Stadium | - |
| 2006 | BAL | Bluefield Orioles | App | Rk | team page | 68 | 31 | 37 | 9.5 | 304 | 355 | -51 | 4 | 8 | Gary Allenson | Bowen Field at Peters Park | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | BOS | Boston Red Sox | MLB-AL | MLB | team page | 162 | 86 | 76 | 11.0 | 820 | 825 | -5 | 3 | 8 | Terry Francona | Fenway Park | dnq |
| 2006 | BOS | Pawtucket Red Sox | IL | AAA | team page | 144 | 69 | 75 | 16.0 | 581 | 653 | -72 | 5 | 10 | Ron Johnson | McCoy Stadium | - |
| 2006 | BOS | Portland Sea Dogs | East | AA | team page | 139 | 72 | 67 | 6.5 | 654 | 592 | 62 | 2 | 4 | Todd Claus | Hadlock Field | League Champions |
| 2006 | BOS | Wilmington Blue Rocks | Caro | A+ | team page | 138 | 67 | 71 | -- | 614 | 601 | 13 | 1 | 4 | Chad Epperson | Daniel S. Frawley Stadium | Lost in 1st Round |
| 2006 | BOS | Greenville Drive | SAL | A | team page | 140 | 67 | 73 | 25.5 | 675 | 608 | 67 | 6 | 11 | Luis Alicea | Fluor Field at the West End | - |
| 2006 | BOS | Lowell Spinners | NYPL | A- | team page | 75 | 39 | 36 | 4.5 | 321 | 317 | 4 | 3 | 9 | Bruce Crabbe | Edward A. LeLacheur Park | - |
| 2006 | BOS | Gulf Coast Red Sox | GCL | Rk | team page | 54 | 35 | 19 | -- | 244 | 198 | 46 | 1 | 1 | Dave Tomlin | City of Palms Park | League Champions |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | CHN | Chicago Cubs | MLB-NL | MLB | team page | 162 | 66 | 96 | 17.5 | 716 | 834 | -118 | 6 | 16 | Dusty Baker | Wrigley Field | dnq |
| 2006 | CHN | Iowa Cubs | PCL | AAA | team page | 144 | 76 | 68 | -- | 609 | 612 | -3 | 2 | 6 | Mike Quade | Principal Park | - |
| 2006 | CHN | West Tennessee Diamond Jaxx | Sou | AA | team page | 140 | 75 | 65 | 6.0 | 521 | 459 | 62 | 2 | 4 | Pat Listach | Pringles Park | - |
| 2006 | CHN | Daytona Cubs | FSL | A+ | team page | 137 | 71 | 66 | 5.0 | 634 | 635 | -1 | 3 | 5 | Don Buford | Jackie Robinson Ballpark | - |
| 2006 | CHN | Peoria Chiefs | Midw | A | team page | 139 | 75 | 64 | 4.0 | 564 | 567 | -3 | 3 | 5 | Jody Davis | O'Brien Field | Lost in 1st Round |
| 2006 | CHN | Boise Hawks | Nwst | A- | team page | 76 | 44 | 32 | -- | 397 | 337 | 60 | 1 | 2 | Steve McFarland | Memorial Stadium | Lost in Finals |
| 2006 | CHN | Arizona Cubs | Ariz | Rk | team page | 55 | 21 | 34 | 15.0 | 258 | 309 | -51 | 8 | 7 | Carmelo Martinez | Fitch Park | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | CHA | Chicago White Sox | MLB-AL | MLB | team page | 162 | 90 | 72 | 6.0 | 868 | 794 | 74 | 3 | 5 | Ozzie Guillen | U.S. Cellular Field | dnq |
| 2006 | CHA | Charlotte Knights | IL | AAA | team page | 141 | 79 | 62 | -- | 673 | 571 | 102 | 1 | 2 | Razor Shines | Knights Stadium | Lost in 1st Round |
| 2006 | CHA | Birmingham Barons | Sou | AA | team page | 140 | 59 | 81 | 27.0 | 501 | 650 | -149 | 4 | 9 | Chris Cron | Hoover Metropolitan Stadium | - |
| 2006 | CHA | Winston-Salem Warthogs | Caro | A+ | team page | 138 | 66 | 72 | 18.5 | 566 | 577 | -11 | 4 | 5 | Rafael Santana | Ernie Shore Field | - |
| 2006 | CHA | Kannapolis Intimidators | SAL | A | team page | 136 | 42 | 94 | 48.5 | 546 | 805 | -259 | 8 | 16 | Omer Munoz | Fieldcrest Cannon Stadium | - |
| 2006 | CHA | Bristol White Sox | App | Rk | team page | 64 | 22 | 42 | 18.0 | 256 | 379 | -123 | 5 | 10 | Nick Leyva | Devault Memorial Stadium | - |
| 2006 | CHA | Great Falls White Sox | Pio | Rk | team page | 76 | 28 | 48 | 23.0 | 369 | 474 | -105 | 4 | 7 | Bobby Tolan | Legion Field | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | CIN | Cincinnati Reds | MLB-NL | MLB | team page | 162 | 80 | 82 | 3.5 | 749 | 801 | -52 | 3 | 7 | Jerry Narron | Great American Ballpark | dnq |
| 2006 | CIN | Louisville Bats | IL | AAA | team page | 143 | 75 | 68 | 1.5 | 578 | 567 | 11 | 3 | 6 | Rick Sweet | Louisville Slugger Field | - |
| 2006 | CIN | Chattanooga Lookouts | Sou | AA | team page | 140 | 81 | 59 | -- | 597 | 553 | 44 | 1 | 2 | Jayhawk Owens | BellSouth Park | Lost in 1st Round |
| 2006 | CIN | Sarasota Reds | FSL | A+ | team page | 139 | 66 | 73 | 13.5 | 596 | 637 | -41 | 6 | 10 | Donnie Scott | Ed Smith Stadium | - |
| 2006 | CIN | Dayton Dragons | Midw | A | team page | 140 | 67 | 73 | 23.5 | 609 | 591 | 18 | 5 | 9 | Billy Gardner | Fifth Third Field | - |
| 2006 | CIN | Billings Mustangs | Pio | Rk | team page | 76 | 51 | 25 | -- | 464 | 359 | 105 | 1 | 1 | Rick Burleson | Cobb Field | Lost in 1st Round |
| 2006 | CIN | Gulf Coast Reds | GCL | Rk | team page | 52 | 18 | 34 | 16.0 | 209 | 254 | -45 | 4 | 13 | Luis Aguayo | Ed Smith Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | CLE | Cleveland Indians | MLB-AL | MLB | team page | 162 | 78 | 84 | 18.0 | 870 | 782 | 88 | 4 | 11 | Eric Wedge | Jacobs Field | dnq |
| 2006 | CLE | Buffalo Bisons | IL | AAA | team page | 141 | 73 | 68 | 10.5 | 646 | 555 | 91 | 4 | 7 | Torey Lovullo | Dunn Tire Park | - |
| 2006 | CLE | Akron Aeros | East | AA | team page | 142 | 87 | 55 | -- | 679 | 580 | 99 | 1 | 1 | Tim Bogar | Canal Park | Lost in Finals |
| 2006 | CLE | Kinston Indians | Caro | A+ | team page | 139 | 85 | 54 | -- | 744 | 544 | 200 | 1 | 1 | Mike Sarbaugh | Grainger Stadium | League Champions |
| 2006 | CLE | Lake County Captains | SAL | A | team page | 138 | 64 | 74 | 19.5 | 568 | 593 | -25 | 7 | 13 | Lee May | Classic Park | - |
| 2006 | CLE | Mahoning Valley Scrappers | NYPL | A- | team page | 76 | 40 | 36 | 3.0 | 297 | 297 | 0 | 2 | 7 | Rouglas Odor | Eastwood Field | - |
| 2006 | CLE | Burlington Indians | App | Rk | team page | 67 | 34 | 33 | 6.0 | 340 | 355 | -15 | 3 | 6 | Kevin Higgins | Burlington Athletic Stadium | - |
| 2006 | CLE | Gulf Coast Indians | GCL | Rk | team page | 50 | 21 | 29 | 11.0 | 240 | 277 | -37 | 5 | 11 | Chain of Lakes Park | - | |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | COL | Colorado Rockies | MLB-NL | MLB | team page | 162 | 76 | 86 | 12.0 | 813 | 812 | 1 | 5 | 12 | Clint Hurdle | Coors Field | dnq |
| 2006 | COL | Colorado Springs Sky Sox | PCL | AAA | team page | 143 | 66 | 77 | 14.5 | 696 | 790 | -94 | 4 | 13 | Tom Runnells | Security Service Field | - |
| 2006 | COL | Tulsa Drillers | Tex | AA | team page | 139 | 75 | 64 | 2.0 | 726 | 678 | 48 | 2 | 4 | Stu Cole | Drillers Stadium | Lost in 1st Round |
| 2006 | COL | Modesto Nuts | Calif | A+ | team page | 140 | 66 | 74 | 16.0 | 704 | 743 | -39 | 4 | 8 | Glenallen Hill, Chad Kreuter | John Thurman Field | - |
| 2006 | COL | Asheville Tourists | SAL | A | team page | 137 | 74 | 63 | 17.0 | 755 | 662 | 93 | 3 | 6 | Joe Mikulik | McCormick Field | - |
| 2006 | COL | Tri-City Dust Devils | Nwst | A- | team page | 76 | 38 | 38 | 6.0 | 301 | 290 | 11 | 2 | 5 | Fred Ocasio | Dust Devils Stadium | - |
| 2006 | COL | Casper Rockies | Pio | Rk | team page | 76 | 27 | 49 | 18.0 | 334 | 490 | -156 | 4 | 8 | P.J. Carey | Mike Lansing Field | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | DET | Detroit Tigers | MLB-AL | MLB | team page | 162 | 95 | 67 | 1.0 | 822 | 675 | 147 | 2 | 3 | Jim Leyland | Comerica Park | Lost World Series (Cardinals) |
| 2006 | DET | Toledo Mud Hens | IL | AAA | team page | 142 | 76 | 66 | -- | 652 | 582 | 70 | 2 | 4 | Larry Parrish | Fifth Third Field | League Champions |
| 2006 | DET | Erie SeaWolves | East | AA | team page | 141 | 60 | 81 | 26.5 | 573 | 630 | -57 | 6 | 12 | Duffy Dyer | Jerry Uht Park | - |
| 2006 | DET | Lakeland Tigers | FSL | A+ | team page | 136 | 68 | 68 | 10.0 | 562 | 621 | -59 | 4 | 6 | Mike Rojas | Joker Marchant Stadium | - |
| 2006 | DET | West Michigan Whitecaps | Midw | A | team page | 137 | 89 | 48 | -- | 620 | 492 | 128 | 1 | 1 | Matt Walbeck | Fifth Third Ballpark | League Champions |
| 2006 | DET | Oneonta Tigers | NYPL | A- | team page | 74 | 40 | 34 | 3.0 | 348 | 302 | 46 | 2 | 6 | Tom Brookens | Damaschke Field | - |
| 2006 | DET | Gulf Coast Tigers (East) | GCL | Rk | team page | 50 | 32 | 18 | -- | 254 | 176 | 78 | 1 | 2 | Kevin Bradshaw | Joker Marchant Stadium | Lost in 1st Round |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | MIA | Florida Marlins | MLB-NL | MLB | team page | 162 | 78 | 84 | 19.0 | 758 | 772 | -14 | 4 | 9 | Joe Girardi | Dolphin Stadium | dnq |
| 2006 | MIA | Albuquerque Isotopes | PCL | AAA | team page | 142 | 70 | 72 | 14.0 | 723 | 730 | -7 | 4 | 10 | Dean Treanor | Isotopes Park | - |
| 2006 | MIA | Carolina Mudcats | Sou | AA | team page | 140 | 61 | 79 | 20.0 | 503 | 593 | -90 | 5 | 8 | Luis Dorante | Five County Stadium | - |
| 2006 | MIA | Jupiter Hammerheads | FSL | A+ | team page | 135 | 55 | 80 | 20.0 | 501 | 613 | -112 | 5 | 11 | Tim Cossins | Roger Dean Stadium | - |
| 2006 | MIA | Greensboro Grasshoppers | SAL | A | team page | 137 | 68 | 69 | 15.0 | 606 | 612 | -6 | 4 | 9 | Brandon Hyde | First Horizon Park | - |
| 2006 | MIA | Jamestown Jammers | NYPL | A- | team page | 72 | 33 | 39 | 8.0 | 302 | 337 | -35 | 5 | 11 | Bo Porter | Russell Diethrick Park | - |
| 2006 | MIA | Gulf Coast Marlins | GCL | Rk | team page | 53 | 29 | 24 | 2.5 | 198 | 196 | 2 | 2 | 5 | Edwin Rodriguez | Roger Dean Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | HOU | Houston Astros | MLB-NL | MLB | team page | 162 | 82 | 80 | 1.5 | 735 | 719 | 16 | 2 | 6 | Phil Garner | Minute Maid Park | dnq |
| 2006 | HOU | Round Rock Express | PCL | AAA | team page | 144 | 85 | 59 | -- | 753 | 613 | 140 | 1 | 2 | Jackie Moore | Dell Diamond | Lost in Finals |
| 2006 | HOU | Corpus Christi Hooks | Tex | AA | team page | 139 | 76 | 63 | 2.0 | 645 | 627 | 18 | 2 | 3 | Dave Clark | Whataburger Field | League Champions |
| 2006 | HOU | Salem Avalanche | Caro | A+ | team page | 137 | 76 | 61 | 8.0 | 582 | 518 | 64 | 2 | 2 | Jim Pankovits | Salem Memorial Baseball Stadium | Lost in 1st Round |
| 2006 | HOU | Lexington Legends | SAL | A | team page | 138 | 75 | 63 | 8.5 | 618 | 586 | 32 | 2 | 5 | Jack Lind | Applebee's Park | Lost in 1st Round |
| 2006 | HOU | Tri-City ValleyCats | NYPL | A- | team page | 74 | 43 | 31 | -- | 321 | 276 | 45 | 1 | 2 | Gregg Langbehn | Joseph L. Bruno Stadium | Lost in Finals |
| 2006 | HOU | Greeneville Astros | App | Rk | team page | 67 | 34 | 33 | 7.5 | 279 | 282 | -3 | 4 | 4 | Ivan De Jesus | Pioneer Park | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | KCA | Kansas City Royals | MLB-AL | MLB | team page | 162 | 62 | 100 | 34.0 | 757 | 971 | -214 | 5 | 13 | Buddy Bell | Kauffman Stadium | dnq |
| 2006 | KCA | Omaha Royals | PCL | AAA | team page | 144 | 53 | 91 | 23.0 | 578 | 734 | -156 | 4 | 16 | Mike Jirschele | Johnny Rosenblatt Stadium | - |
| 2006 | KCA | Wichita Wranglers | Tex | AA | team page | 139 | 77 | 62 | -- | 785 | 701 | 84 | 1 | 2 | Frank White | Lawrence-Dumont Stadium | Lost in Finals |
| 2006 | KCA | High Desert Mavericks | Calif | A+ | team page | 140 | 73 | 67 | 1.0 | 729 | 742 | -13 | 2 | 4 | Jeff Carter | Mavericks Stadium | Lost in 1st Round |
| 2006 | KCA | Burlington Bees | Midw | A | team page | 137 | 64 | 73 | 14.0 | 539 | 551 | -12 | 6 | 11 | Jim Gabella | Community Field | - |
| 2006 | KCA | Arizona Royals | Ariz | Rk | team page | 56 | 36 | 20 | 0.5 | 365 | 254 | 111 | 2 | 2 | Lloyd Simmons | Surprise Stadium | - |
| 2006 | KCA | Idaho Falls Chukars | Pio | Rk | team page | 76 | 40 | 36 | 5.0 | 423 | 385 | 38 | 2 | 4 | Brian Rupp | McDermott Field | Lost in Finals |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | ANA | Los Angeles Angels | MLB-AL | MLB | team page | 162 | 89 | 73 | 4.0 | 766 | 732 | 34 | 2 | 6 | Mike Scioscia | Angel Stadium of Anaheim | dnq |
| 2006 | ANA | Salt Lake Bees | PCL | AAA | team page | 144 | 81 | 63 | -- | 798 | 739 | 59 | 1 | 3 | Brian Harper | Franklin Covey Field | Lost in 1st Round |
| 2006 | ANA | Arkansas Travelers | Tex | AA | team page | 138 | 51 | 87 | 25.5 | 689 | 872 | -183 | 4 | 8 | Tyrone Boykin | Ray Winder Field | - |
| 2006 | ANA | Rancho Cucamonga Quakes | Calif | A+ | team page | 140 | 63 | 77 | 11.0 | 713 | 731 | -18 | 5 | 9 | Bobby Mitchell | Rancho Cucamonga Epicenter | - |
| 2006 | ANA | Cedar Rapids Kernels | Midw | A | team page | 139 | 65 | 74 | 14.0 | 592 | 572 | 20 | 5 | 10 | Bobby Magallanes | New Veterans Memorial Stadium | - |
| 2006 | ANA | Arizona Angels | Ariz | Rk | team page | 55 | 34 | 21 | 2.0 | 312 | 234 | 78 | 3 | 3 | Ever Magallanes | Tempe Diablo Stadium | Lost in finals |
| 2006 | ANA | Orem Owlz | Pio | Rk | team page | 76 | 45 | 31 | -- | 398 | 344 | 54 | 1 | 2 | Tom Kotchman | Brent Brown Ballpark | Lost in 1st Round |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | LAN | Los Angeles Dodgers | MLB-NL | MLB | team page | 162 | 88 | 74 | -- | 820 | 751 | 69 | 2 | 2 | Grady Little | Dodger Stadium | Lost NLDS (Mets) |
| 2006 | LAN | Las Vegas 51s | PCL | AAA | team page | 144 | 67 | 77 | 24.0 | 735 | 776 | -41 | 3 | 12 | Jerry Royster | Cashman Field | - |
| 2006 | LAN | Jacksonville Suns | Sou | AA | team page | 140 | 86 | 54 | -- | 646 | 486 | 160 | 1 | 1 | John Shoemaker | Baseball Grounds of Jacksonville | Lost in 1st Round |
| 2006 | LAN | Vero Beach Dodgers | FSL | A+ | team page | 131 | 51 | 80 | 22.0 | 577 | 671 | -94 | 6 | 12 | Luis Salazar | Holman Stadium | - |
| 2006 | LAN | Columbus Catfish | SAL | A | team page | 140 | 72 | 68 | 20.5 | 711 | 743 | -32 | 4 | 7 | Travis Barbary | Golden Park | - |
| 2006 | LAN | Gulf Coast Dodgers | GCL | Rk | team page | 54 | 32 | 22 | -- | 272 | 198 | 74 | 1 | 4 | Juan Bustabad | Holman Stadium | Lost in Finals |
| 2006 | LAN | Ogden Raptors | Pio | Rk | team page | 76 | 37 | 39 | 8.0 | 438 | 411 | 27 | 3 | 5 | Lance Parrish | Lindquist Field | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | MIL | Milwaukee Brewers | MLB-NL | MLB | team page | 162 | 75 | 87 | 8.5 | 730 | 833 | -103 | 4 | 13 | Ned Yost | Miller Park | dnq |
| 2006 | MIL | Nashville Sounds | PCL | AAA | team page | 144 | 76 | 68 | -- | 656 | 594 | 62 | 1 | 5 | Frank Kremblas | Herschel Greer Stadium | Lost in 1st Round |
| 2006 | MIL | Huntsville Stars | Sou | AA | team page | 138 | 67 | 71 | 13.0 | 578 | 525 | 53 | 4 | 6 | Don Money | Joe W. Davis Stadium | Lost in Finals |
| 2006 | MIL | Brevard County Manatees | FSL | A+ | team page | 129 | 64 | 65 | 8.0 | 555 | 540 | 15 | 4 | 8 | Ramon Aviles | USSSA Space Coast Complex | - |
| 2006 | MIL | West Virginia Power | SAL | A | team page | 136 | 74 | 62 | 8.5 | 691 | 615 | 76 | 3 | 4 | Mike Guerrero | Appalachian Power Park | - |
| 2006 | MIL | Arizona Brewers | Ariz | Rk | team page | 56 | 21 | 35 | 15.5 | 321 | 422 | -101 | 7 | 8 | Charlie Greene | Maryvale Baseball Park | - |
| 2006 | MIL | Helena Brewers | Pio | Rk | team page | 76 | 34 | 42 | 17.0 | 409 | 416 | -7 | 3 | 6 | Ed Sedar | Kindrick Field | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | MIN | Minnesota Twins | MLB-AL | MLB | team page | 162 | 96 | 66 | -- | 801 | 683 | 118 | 1 | 2 | Ron Gardenhire | Hubert H. Humphrey Metrodome | Lost ALDS (Athletics) |
| 2006 | MIN | Rochester Red Wings | IL | AAA | team page | 143 | 79 | 64 | 5.5 | 614 | 533 | 81 | 2 | 3 | Stan Cliburn | Frontier Field | Lost in Finals |
| 2006 | MIN | New Britain Rock Cats | East | AA | team page | 142 | 64 | 78 | 16.0 | 581 | 639 | -58 | 5 | 11 | Riccardo Ingram | New Britain Stadium | - |
| 2006 | MIN | Fort Myers Miracle | FSL | A+ | team page | 140 | 80 | 60 | -- | 630 | 583 | 47 | 1 | 1 | Kevin Boles | Hammond Stadium | Lost in 1st Round |
| 2006 | MIN | Beloit Snappers | Midw | A | team page | 138 | 74 | 64 | 4.5 | 602 | 531 | 71 | 4 | 6 | Jeff Smith | Harry C. Pohlman Field | Lost in 2nd Round |
| 2006 | MIN | Elizabethton Twins | App | Rk | team page | 68 | 42 | 26 | -- | 361 | 320 | 41 | 1 | 1 | Ray Smith | Joe O'Brien Field | Lost in finals |
| 2006 | MIN | Gulf Coast Twins | GCL | Rk | team page | 53 | 26 | 27 | 8.5 | 257 | 277 | -20 | 2 | 7 | Nelson Prada | Hammond Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | NYN | New York Mets | MLB-NL | MLB | team page | 162 | 97 | 65 | -- | 834 | 731 | 103 | 1 | 1 | Willie Randolph | Shea Stadium | Lost NLCS (Cardinals) |
| 2006 | NYN | Norfolk Tides | IL | AAA | team page | 141 | 57 | 84 | 22.0 | 497 | 619 | -122 | 3 | 13 | Ken Oberkfell, Tony Tijerina | Harbor Park | - |
| 2006 | NYN | Binghamton Mets | East | AA | team page | 140 | 70 | 70 | 9.0 | 558 | 561 | -3 | 3 | 6 | Juan Samuel | NYSEG Stadium | - |
| 2006 | NYN | St. Lucie Mets | FSL | A+ | team page | 139 | 77 | 62 | -- | 608 | 546 | 62 | 1 | 3 | Gary Carter | Tradition Field | League Champions |
| 2006 | NYN | Hagerstown Suns | SAL | A | team page | 140 | 58 | 82 | 26.5 | 522 | 604 | -82 | 8 | 14 | Frank Cacciatore | Municipal Stadium | - |
| 2006 | NYN | Brooklyn Cyclones | NYPL | A- | team page | 74 | 41 | 33 | 4.0 | 251 | 284 | -33 | 2 | 5 | George Greer | KeySpan Park | Lost in 1st Round |
| 2006 | NYN | Gulf Coast Mets | GCL | Rk | team page | 53 | 23 | 30 | 8.5 | 227 | 298 | -71 | 3 | 9 | Bobby Floyd | Tradition Field | - |
| 2006 | NYN | Kingsport Mets | App | Rk | team page | 67 | 34 | 33 | 7.5 | 357 | 301 | 56 | 3 | 5 | Donovan Mitchell | Hunter Wright Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | NYA | New York Yankees | MLB-AL | MLB | team page | 162 | 97 | 65 | -- | 930 | 767 | 163 | 1 | 1 | Joe Torre | Yankee Stadium I | Lost ALDS (Tigers) |
| 2006 | NYA | Columbus Clippers | IL | AAA | team page | 142 | 69 | 73 | 7.0 | 620 | 655 | -35 | 4 | 9 | Dave Miley | Cooper Stadium | - |
| 2006 | NYA | Trenton Thunder | East | AA | team page | 142 | 80 | 62 | -- | 659 | 514 | 145 | 1 | 2 | Billy Masse | Mercer County Waterfront Park | Lost in 1st Round |
| 2006 | NYA | Tampa Yankees | FSL | A+ | team page | 137 | 75 | 62 | 3.5 | 633 | 553 | 80 | 2 | 4 | Luis Sojo | Legends Field | - |
| 2006 | NYA | Charleston (sc) RiverDogs | SAL | A | team page | 140 | 78 | 62 | 14.5 | 632 | 562 | 70 | 2 | 3 | Bill Mosiello | Joseph P. Riley, Jr. Park | - |
| 2006 | NYA | Staten Island Yankees | NYPL | A- | team page | 74 | 45 | 29 | -- | 365 | 277 | 88 | 1 | 1 | Gaylen Pitts | Richmond County Bank Ballpark | League Champions |
| 2006 | NYA | Gulf Coast Yankees | GCL | Rk | team page | 51 | 31 | 20 | 1.5 | 241 | 176 | 65 | 2 | 3 | Yankee Complex | - | |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | OAK | Oakland Athletics | MLB-AL | MLB | team page | 162 | 93 | 69 | -- | 771 | 727 | 44 | 1 | 4 | Ken Macha | McAfee Coliseum | Lost ALCS (Tigers) |
| 2006 | OAK | Sacramento River Cats | PCL | AAA | team page | 144 | 78 | 66 | 13.0 | 794 | 709 | 85 | 2 | 4 | Tony DeFrancesco | Raley Field | - |
| 2006 | OAK | Midland RockHounds | Tex | AA | team page | 139 | 78 | 61 | -- | 715 | 643 | 72 | 1 | 1 | Von Hayes | Citibank Ballpark | Lost in 1st Round |
| 2006 | OAK | Stockton Ports | Calif | A+ | team page | 140 | 69 | 71 | 13.0 | 779 | 754 | 25 | 3 | 6 | Todd Steverson | Banner Island Ballpark | Lost in 1st Round |
| 2006 | OAK | Kane County Cougars | Midw | A | team page | 139 | 79 | 60 | -- | 720 | 616 | 104 | 1 | 2 | Aaron Nieckula | Elfstrom Stadium | Lost in Finals |
| 2006 | OAK | Vancouver Canadians | Nwst | A- | team page | 76 | 39 | 37 | 16.0 | 342 | 332 | 10 | 3 | 4 | Rick Magnante | Nat Bailey Stadium | - |
| 2006 | OAK | Arizona Athletics | Ariz | Rk | team page | 55 | 24 | 31 | 12.0 | 252 | 342 | -90 | 6 | 6 | Ruben Escalera | Papago Park Sports Facility | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | PHI | Philadelphia Phillies | MLB-NL | MLB | team page | 162 | 85 | 77 | 12.0 | 865 | 812 | 53 | 2 | 4 | Charlie Manuel | Citizens Bank Park | dnq |
| 2006 | PHI | Scranton/Wilkes-Barre Red Barons | IL | AAA | team page | 142 | 84 | 58 | -- | 574 | 503 | 71 | 1 | 1 | John Russell | Lackawanna County Stadium | Lost in 1st Round |
| 2006 | PHI | Reading Phillies | East | AA | team page | 140 | 71 | 69 | 15.0 | 612 | 595 | 17 | 3 | 5 | P.J. Forbes | FirstEnergy Stadium | - |
| 2006 | PHI | Clearwater Threshers | FSL | A+ | team page | 139 | 67 | 72 | 12.5 | 630 | 639 | -9 | 5 | 9 | Greg Legg | Bright House Field | - |
| 2006 | PHI | Lakewood BlueClaws | SAL | A | team page | 139 | 84 | 55 | -- | 637 | 509 | 128 | 1 | 2 | Dave Huppert | FirstEnergy Park | League Champions |
| 2006 | PHI | Batavia Muckdogs | NYPL | A- | team page | 73 | 35 | 38 | 6.5 | 289 | 254 | 35 | 4 | 10 | Steve Roadcap | Dwyer Stadium | - |
| 2006 | PHI | Gulf Coast Phillies | GCL | Rk | team page | 49 | 18 | 31 | 14.5 | 180 | 275 | -95 | 3 | 12 | Jim Morris | Carpenter Complex | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | PIT | Pittsburgh Pirates | MLB-NL | MLB | team page | 162 | 67 | 95 | 16.5 | 691 | 797 | -106 | 5 | 15 | Jim Tracy | PNC Park | dnq |
| 2006 | PIT | Indianapolis Indians | IL | AAA | team page | 142 | 76 | 66 | -- | 578 | 541 | 37 | 1 | 5 | Victory Field | Lost in tiebreaker | |
| 2006 | PIT | Altoona Curve | East | AA | team page | 139 | 75 | 64 | 10.5 | 607 | 561 | 46 | 2 | 3 | Tim Leiper | Blair County Ballpark | Lost in 1st Round |
| 2006 | PIT | Lynchburg Hillcats | Caro | A+ | team page | 138 | 63 | 75 | 4.0 | 652 | 678 | -26 | 3 | 7 | Gary Green | Calvin Falwell Field | - |
| 2006 | PIT | Hickory Crawdads | SAL | A | team page | 137 | 67 | 70 | 16.0 | 702 | 716 | -14 | 5 | 10 | Jeff Branson | L. P. Frans Stadium | - |
| 2006 | PIT | Williamsport Crosscutters | NYPL | A- | team page | 75 | 28 | 47 | 14.5 | 243 | 279 | -36 | 6 | 13 | Tom Prince | Bowman Field | - |
| 2006 | PIT | Gulf Coast Pirates | GCL | Rk | team page | 53 | 27 | 26 | 6.5 | 233 | 211 | 22 | 3 | 6 | Turner Ward | Pirate City Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | SDN | San Diego Padres | MLB-NL | MLB | team page | 162 | 88 | 74 | -- | 731 | 679 | 52 | 1 | 3 | Bruce Bochy | Petco Park | Lost NLDS (Cardinals) |
| 2006 | SDN | Portland Beavers | PCL | AAA | team page | 144 | 68 | 76 | 13.0 | 732 | 774 | -42 | 3 | 11 | Craig Colbert | PGE Park | - |
| 2006 | SDN | Mobile BayBears | Sou | AA | team page | 138 | 62 | 76 | 23.0 | 529 | 578 | -49 | 3 | 7 | Gary Jones | Hank Aaron Stadium | - |
| 2006 | SDN | Lake Elsinore Storm | Calif | A+ | team page | 140 | 74 | 66 | -- | 689 | 648 | 41 | 1 | 3 | Rick Renteria | Lake Elsinore Diamond | Lost in 2nd Round |
| 2006 | SDN | Fort Wayne Wizards | Midw | A | team page | 137 | 71 | 66 | 18.0 | 672 | 612 | 60 | 4 | 8 | Randy Ready | Memorial Stadium | Lost in 1st Round |
| 2006 | SDN | Eugene Emeralds | Nwst | A- | team page | 76 | 43 | 33 | 12.0 | 391 | 339 | 52 | 2 | 3 | Doug Dascenzo | Civic Stadium | - |
| 2006 | SDN | Arizona Padres | Ariz | Rk | team page | 55 | 36 | 19 | -- | 382 | 285 | 97 | 1 | 1 | Carlos Lezcano | Peoria Sports Complex | League Champions |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | SFN | San Francisco Giants | MLB-NL | MLB | team page | 161 | 76 | 85 | 11.5 | 746 | 786 | -40 | 3 | 10 | Felipe Alou | AT&T Park | dnq |
| 2006 | SFN | Fresno Grizzlies | PCL | AAA | team page | 144 | 61 | 83 | 30.0 | 712 | 788 | -76 | 4 | 14 | Shane Turner | Grizzlies Stadium | - |
| 2006 | SFN | Connecticut Defenders | East | AA | team page | 141 | 64 | 77 | 15.5 | 460 | 587 | -127 | 6 | 10 | Dave Machemer | Senator Thomas J. Dodd Memorial Stadium | - |
| 2006 | SFN | San Jose Giants | Calif | A+ | team page | 140 | 82 | 58 | -- | 716 | 640 | 76 | 1 | 1 | Lenn Sakata | San Jose Municipal Stadium | Lost in 2nd Round |
| 2006 | SFN | Augusta GreenJackets | SAL | A | team page | 139 | 92 | 47 | -- | 673 | 518 | 155 | 1 | 1 | Roberto Kelly | Lake Olmstead Stadium | Lost in Finals |
| 2006 | SFN | Salem-Keizer Volcanoes | Nwst | A- | team page | 76 | 55 | 21 | -- | 412 | 260 | 152 | 1 | 1 | Steve Decker | Volcanoes Stadium | League Champions |
| 2006 | SFN | Arizona Giants | Ariz | Rk | team page | 55 | 33 | 22 | 3.0 | 324 | 273 | 51 | 4 | 4 | Bert Hunter | Scottsdale Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | SEA | Seattle Mariners | MLB-AL | MLB | team page | 162 | 78 | 84 | 15.0 | 756 | 792 | -36 | 4 | 10 | Mike Hargrove | Safeco Field | dnq |
| 2006 | SEA | Tacoma Rainiers | PCL | AAA | team page | 144 | 74 | 70 | 7.0 | 706 | 688 | 18 | 2 | 8 | Dave Brundage | Cheney Stadium | - |
| 2006 | SEA | San Antonio Missions | Tex | AA | team page | 138 | 60 | 78 | 17.5 | 576 | 607 | -31 | 4 | 7 | Daren Brown | Nelson W. Wolff Municipal Stadium | - |
| 2006 | SEA | Inland Empire 66ers | Calif | A+ | team page | 140 | 72 | 68 | 2.0 | 690 | 700 | -10 | 3 | 5 | Gary Thurman | Arrowhead Credit Union Park | League Champions |
| 2006 | SEA | Wisconsin Timber Rattlers | Midw | A | team page | 140 | 54 | 86 | 25.5 | 563 | 720 | -157 | 7 | 13 | Jim Horner | Fox Cities Stadium | - |
| 2006 | SEA | Everett AquaSox | Nwst | A- | team page | 76 | 31 | 45 | 24.0 | 313 | 404 | -91 | 4 | 6 | Jim Horner | Everett Memorial Stadium | - |
| 2006 | SEA | Arizona Mariners | Ariz | Rk | team page | 55 | 25 | 30 | 11.0 | 315 | 290 | 25 | 5 | 5 | Dana Williams | Peoria Sports Complex | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | SLN | St. Louis Cardinals | MLB-NL | MLB | team page | 161 | 83 | 78 | -- | 781 | 762 | 19 | 1 | 5 | Tony La Russa | Busch Stadium III | Won World Series (Tigers) |
| 2006 | SLN | Memphis Redbirds | PCL | AAA | team page | 144 | 58 | 86 | 18.0 | 555 | 684 | -129 | 3 | 15 | Danny Sheaffer | AutoZone Park | - |
| 2006 | SLN | Springfield Cardinals | Tex | AA | team page | 138 | 66 | 72 | 10.5 | 665 | 668 | -3 | 3 | 6 | Chris Maloney | Hammons Field | - |
| 2006 | SLN | Palm Beach Cardinals | FSL | A+ | team page | 135 | 75 | 60 | 2.0 | 619 | 573 | 46 | 2 | 2 | Ron Warner | Roger Dean Stadium | Lost in 1st Round |
| 2006 | SLN | Quad Cities Swing | Midw | A | team page | 137 | 76 | 61 | 2.0 | 694 | 577 | 117 | 2 | 3 | Keith Mitchell | John O'Donnell Stadium | Lost in 1st Round |
| 2006 | SLN | State College Spikes | NYPL | A- | team page | 75 | 39 | 36 | 3.5 | 299 | 321 | -22 | 3 | 8 | Mark DeJohn | Medlar Field at Lubrano Park | - |
| 2006 | SLN | Johnson City Cardinals | App | Rk | team page | 68 | 34 | 34 | 8.0 | 314 | 364 | -50 | 2 | 7 | Dan Radison | Howard Johnson Field | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | TBA | Tampa Bay Devil Rays | MLB-AL | MLB | team page | 162 | 61 | 101 | 36.0 | 689 | 856 | -167 | 5 | 14 | Joe Maddon | Tropicana Field | dnq |
| 2006 | TBA | Durham Bulls | IL | AAA | team page | 142 | 64 | 78 | 15.5 | 592 | 649 | -57 | 2 | 11 | John Tamargo | Durham Bulls Athletic Park | - |
| 2006 | TBA | Montgomery Biscuits | Sou | AA | team page | 139 | 77 | 62 | 8.5 | 549 | 512 | 37 | 2 | 3 | Charlie Montoyo | Montgomery Riverwalk Stadium | League Champions |
| 2006 | TBA | Visalia Oaks | Calif | A+ | team page | 140 | 75 | 65 | 7.0 | 861 | 774 | 87 | 2 | 2 | Joe Szekely | Recreation Park | Lost in Finals |
| 2006 | TBA | Southwest Michigan Devil Rays | Midw | A | team page | 139 | 62 | 77 | 28.0 | 468 | 628 | -160 | 6 | 12 | Skeeter Barnes | C.O. Brown Stadium | - |
| 2006 | TBA | Hudson Valley Renegades | NYPL | A- | team page | 73 | 30 | 43 | 14.5 | 255 | 303 | -48 | 4 | 12 | Matt Quatraro | Dutchess Stadium | - |
| 2006 | TBA | Princeton Devil Rays | App | Rk | team page | 64 | 28 | 36 | 10.5 | 287 | 293 | -6 | 5 | 9 | Jamie Nelson | H.P. Hunnicut Field | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | TEX | Texas Rangers | MLB-AL | MLB | team page | 162 | 80 | 82 | 13.0 | 835 | 784 | 51 | 3 | 9 | Buck Showalter | Ameriquest Field | dnq |
| 2006 | TEX | Oklahoma RedHawks | PCL | AAA | team page | 144 | 74 | 70 | 11.0 | 579 | 633 | -54 | 2 | 7 | Mike Boulanger, Tim Ireland | AT&T Bricktown Ballpark | - |
| 2006 | TEX | Frisco RoughRiders | Tex | AA | team page | 140 | 72 | 68 | 6.5 | 671 | 676 | -5 | 3 | 5 | Darryl Kennedy | Dr. Pepper/Seven Up Ballpark | - |
| 2006 | TEX | Bakersfield Blaze | Calif | A+ | team page | 140 | 58 | 82 | 24.0 | 693 | 823 | -130 | 5 | 10 | Carlos Subero | Sam Lynn Ballpark | - |
| 2006 | TEX | Clinton LumberKings | Midw | A | team page | 139 | 45 | 94 | 34.0 | 534 | 760 | -226 | 8 | 14 | Andy Fox | Alliant Energy Field | - |
| 2006 | TEX | Spokane Indians | Nwst | A- | team page | 76 | 26 | 50 | 18.0 | 330 | 473 | -143 | 4 | 8 | Mike Micucci | Avista Stadium | - |
| 2006 | TEX | Arizona Rangers | Ariz | Rk | team page | 56 | 19 | 37 | 17.5 | 252 | 356 | -104 | 9 | 9 | Bob Skube | Surprise Stadium | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | TOR | Toronto Blue Jays | MLB-AL | MLB | team page | 162 | 87 | 75 | 10.0 | 809 | 754 | 55 | 2 | 7 | John Gibbons | Rogers Centre | dnq |
| 2006 | TOR | Syracuse SkyChiefs | IL | AAA | team page | 143 | 64 | 79 | 20.5 | 599 | 663 | -64 | 6 | 12 | Mike Basso | Alliance Bank Stadium | - |
| 2006 | TOR | New Hampshire Fisher Cats | East | AA | team page | 141 | 68 | 73 | 11.5 | 593 | 598 | -5 | 4 | 7 | Doug Davis | Merchantsauto.com Stadium | - |
| 2006 | TOR | Dunedin Blue Jays | FSL | A+ | team page | 137 | 68 | 69 | 10.5 | 686 | 623 | 63 | 3 | 7 | Omar Malave | Knology Park | Lost in Finals |
| 2006 | TOR | Lansing Lugnuts | Midw | A | team page | 137 | 72 | 65 | 17.0 | 608 | 566 | 42 | 3 | 7 | Ken Joyce | Oldsmobile Park | Lost in 2nd Round |
| 2006 | TOR | Auburn Doubledays | NYPL | A- | team page | 74 | 42 | 32 | -- | 337 | 288 | 49 | 1 | 3 | Dennis Holmberg | Falcon Park II | Lost in 1st Round |
| 2006 | TOR | Pulaski Blue Jays | App | Rk | team page | 68 | 35 | 33 | 5.5 | 370 | 321 | 49 | 2 | 3 | Dave Pano | Calfee Park | - |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 2006 | WAS | Washington Nationals | MLB-NL | MLB | team page | 162 | 71 | 91 | 26.0 | 746 | 872 | -126 | 5 | 14 | Frank Robinson | RFK Memorial Stadium | dnq |
| 2006 | WAS | New Orleans Zephyrs | PCL | AAA | team page | 143 | 72 | 71 | 12.5 | 643 | 622 | 21 | 3 | 9 | Tim Foli | Zephyr Field | - |
| 2006 | WAS | Harrisburg Senators | East | AA | team page | 142 | 67 | 75 | 20.0 | 563 | 684 | -121 | 5 | 9 | John Stearns | Commerce Bank Park | - |
| 2006 | WAS | Potomac Nationals | Caro | A+ | team page | 140 | 64 | 76 | 4.0 | 623 | 715 | -92 | 2 | 6 | Edgar Caceres | G. Richard Pfitzner Stadium | - |
| 2006 | WAS | Savannah Sand Gnats | SAL | A | team page | 139 | 56 | 83 | 36.0 | 564 | 718 | -154 | 7 | 15 | Robert Williams | Grayson Stadium | - |
| 2006 | WAS | Vermont Lake Monsters | NYPL | A- | team page | 74 | 23 | 51 | 20.0 | 262 | 379 | -117 | 4 | 14 | Edgar Caceres, Jose Alguacil | Centennial Field | - |
| 2006 | WAS | Gulf Coast Nationals | GCL | Rk | team page | 54 | 23 | 31 | 9.0 | 220 | 226 | -6 | 4 | 10 | Bob Henley | USSSA Space Coast Complex | - |