| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | ANA | Anaheim Angels | MLB-AL | MLB | team page | 162 | 70 | 92 | 25.0 | 711 | 826 | -115 | 4 | 10 | Terry Collins, Joe Maddon | Edison International Field | dnq |
| 1999 | ANA | Edmonton Trappers | PCL | AAA | team page | 139 | 65 | 74 | 17.5 | 730 | 746 | -16 | 3 | 12 | Carney Lansford | Telus Field | dnq |
| 1999 | ANA | Erie SeaWolves | East | AA | team page | 142 | 81 | 61 | 13.0 | 671 | 617 | 54 | 2 | 2 | Garry Templeton | Jerry Uht Park | Lost in Semi-Finals |
| 1999 | ANA | Lake Elsinore Storm | Calif | A+ | team page | 134 | 63 | 71 | 13.5 | 753 | 771 | -18 | 4 | 7 | Mario Mendoza | Lake Elsinore Diamond | dnq |
| 1999 | ANA | Cedar Rapids Kernels | Midw | A | team page | 138 | 61 | 77 | 15.5 | 666 | 741 | -75 | 4 | 12 | Mitch Seoane | Veterans Field | dnq |
| 1999 | ANA | Boise Hawks | Nwst | A- | team page | 76 | 43 | 33 | 1.0 | 556 | 451 | 105 | 2 | 2 | Tom Kotchman | Memorial Stadium | dnq |
| 1999 | ANA | Butte Copper Kings | Pio | Rk | team page | 75 | 32 | 43 | 16.0 | 529 | 602 | -73 | 3 | 6 | Joe Urso | Alumni Coliseum | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | ARI | Arizona Diamondbacks | MLB-NL | MLB | team page | 162 | 100 | 62 | -- | 908 | 676 | 232 | 1 | 2 | Buck Showalter | Bank One Ballpark | Lost in 1st Round (Mets) |
| 1999 | ARI | Tucson Sidewinders | PCL | AAA | team page | 142 | 66 | 76 | 7.0 | 766 | 807 | -41 | 4 | 13 | Chris Speier | Tucson Electric Park | dnq |
| 1999 | ARI | El Paso Diablos | Tex | AA | team page | 140 | 64 | 76 | 19.0 | 726 | 741 | -15 | 4 | 7 | Don Wakamatsu | Cohen Stadium | dnq |
| 1999 | ARI | High Desert Mavericks | Calif | A+ | team page | 141 | 68 | 73 | 12.0 | 903 | 890 | 13 | 3 | 6 | Derek Bryant | Mavericks Stadium | Lost in 1st Round |
| 1999 | ARI | South Bend Silver Hawks | Midw | A | team page | 139 | 68 | 71 | 8.5 | 642 | 702 | -60 | 3 | 9 | Mike Brumley | Stanley Covelski Regional Stadium | dnq |
| 1999 | ARI | Arizona Diamondbacks | Ariz | Rk | team page | 56 | 24 | 32 | 15.0 | 292 | 330 | -38 | 6 | 6 | Roly De Armas | Tucson Electric Park | dnq |
| 1999 | ARI | Missoula Osprey | Pio | Rk | team page | 76 | 45 | 31 | 2.5 | 552 | 457 | 95 | 2 | 3 | Joe Almaraz | Lindborg-Cregg Field | League Champions |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | ATL | Atlanta Braves | MLB-NL | MLB | team page | 162 | 103 | 59 | -- | 840 | 661 | 179 | 1 | 1 | Bobby Cox | Turner Field | Lost World Series (Yankees) |
| 1999 | ATL | Richmond Braves | IL | AAA | team page | 142 | 64 | 78 | 18.5 | 661 | 693 | -32 | 4 | 10 | Randy Ingle | The Diamond | dnq |
| 1999 | ATL | Greenville Braves | Sou | AA | team page | 138 | 58 | 80 | 15.5 | 640 | 763 | -123 | 5 | 10 | Paul Runge | Greenville Municipal Stadium | dnq |
| 1999 | ATL | Myrtle Beach Pelicans | Caro | A+ | team page | 139 | 79 | 60 | 1.0 | 637 | 552 | 85 | 2 | 2 | Brian Snitker | BB&T Coastal Field | Co-League Champions |
| 1999 | ATL | Macon Braves | SAL | A | team page | 138 | 74 | 64 | -- | 661 | 585 | 76 | 1 | 4 | Jeff Treadway | Luther Williams Field | Lost in 1st Round |
| 1999 | ATL | Jamestown Jammers | NYPL | A- | team page | 76 | 38 | 38 | 5.0 | 365 | 377 | -12 | 4 | 9 | Jim Saul | Russell Diethrick Park | dnq |
| 1999 | ATL | Danville Braves | App | Rk | team page | 69 | 38 | 31 | 2.5 | 408 | 398 | 10 | 2 | 5 | Joe Cannon | American Legion Field | dnq |
| 1999 | ATL | Gulf Coast Braves | GCL | Rk | team page | 60 | 27 | 33 | 12.0 | 265 | 258 | 7 | 3 | 10 | Rick Albert | Cracker Jack Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | BAL | Baltimore Orioles | MLB-AL | MLB | team page | 162 | 78 | 84 | 20.0 | 851 | 815 | 36 | 4 | 8 | Ray Miller | Oriole Park at Camden Yards | dnq |
| 1999 | BAL | Rochester Red Wings | IL | AAA | team page | 144 | 61 | 83 | 17.0 | 668 | 740 | -72 | 5 | 12 | Dave Machemer | Frontier Field | dnq |
| 1999 | BAL | Bowie Baysox | East | AA | team page | 141 | 70 | 71 | 2.5 | 676 | 670 | 6 | 5 | 6 | Joe Ferguson | Prince George's Stadium | dnq |
| 1999 | BAL | Frederick Keys | Caro | A+ | team page | 138 | 67 | 71 | 10.0 | 699 | 714 | -15 | 2 | 5 | Andy Etchebarren | Harry Grove Stadium | dnq |
| 1999 | BAL | Delmarva Shorebirds | SAL | A | team page | 138 | 58 | 80 | 25.0 | 627 | 705 | -78 | 4 | 14 | Butch Davis | Arthur W. Perdue Stadium | dnq |
| 1999 | BAL | Bluefield Orioles | App | Rk | team page | 68 | 25 | 43 | 15.0 | 445 | 505 | -60 | 3 | 8 | Duffy Dyer | Bowen Field at Peters Park | dnq |
| 1999 | BAL | Gulf Coast Orioles | GCL | Rk | team page | 59 | 31 | 28 | 5.5 | 303 | 297 | 6 | 3 | 6 | Jesus Alfaro | Ed Smith Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | BOS | Boston Red Sox | MLB-AL | MLB | team page | 162 | 94 | 68 | 4.0 | 836 | 718 | 118 | 2 | 4 | Jimy Williams | Fenway Park | Lost ALCS (Yankees) |
| 1999 | BOS | Pawtucket Red Sox | IL | AAA | team page | 144 | 76 | 68 | 2.0 | 776 | 682 | 94 | 2 | 6 | Gary Jones | McCoy Stadium | dnq |
| 1999 | BOS | Trenton Thunder | East | AA | team page | 142 | 92 | 50 | -- | 785 | 603 | 182 | 1 | 1 | DeMarlo Hale | Mercer County Waterfront Park | Lost in Semi-Finals |
| 1999 | BOS | Sarasota Red Sox | FSL | A+ | team page | 139 | 67 | 72 | 20.0 | 693 | 709 | -16 | 6 | 9 | Butch Hobson | Ed Smith Stadium | dnq |
| 1999 | BOS | Augusta GreenJackets | SAL | A | team page | 139 | 69 | 70 | 5.5 | 626 | 585 | 41 | 3 | 8 | Billy Gardner | Lake Olmstead Stadium | League Champions |
| 1999 | BOS | Lowell Spinners | NYPL | A- | team page | 76 | 34 | 42 | 8.0 | 379 | 395 | -16 | 6 | 11 | Luis Aguayo | Edward A. LeLacheur Park | dnq |
| 1999 | BOS | Gulf Coast Red Sox | GCL | Rk | team page | 59 | 30 | 29 | 6.5 | 279 | 273 | 6 | 4 | 7 | John Sanders | City of Palms Park | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | CHN | Chicago Cubs | MLB-NL | MLB | team page | 162 | 67 | 95 | 30.0 | 747 | 920 | -173 | 6 | 15 | Jim Riggleman | Wrigley Field | dnq |
| 1999 | CHN | Iowa Cubs | PCL | AAA | team page | 141 | 65 | 76 | 16.0 | 699 | 716 | -17 | 4 | 14 | Terry Kennedy | Sec Taylor Stadium II | dnq |
| 1999 | CHN | West Tennessee Diamond Jaxx | Sou | AA | team page | 141 | 84 | 57 | -- | 646 | 579 | 67 | 1 | 1 | Dave Trembley | Pringles Park | Lost in Finals |
| 1999 | CHN | Daytona Cubs | FSL | A+ | team page | 138 | 63 | 75 | 10.0 | 589 | 694 | -105 | 4 | 11 | Nate Oliver | Jackie Robinson Ballpark | dnq |
| 1999 | CHN | Lansing Lugnuts | Midw | A | team page | 140 | 73 | 67 | 4.0 | 822 | 750 | 72 | 2 | 6 | Oscar Acosta | Oldsmobile Park | Lost in Semi-Finals |
| 1999 | CHN | Eugene Emeralds | Nwst | A- | team page | 76 | 29 | 47 | 10.0 | 390 | 501 | -111 | 4 | 8 | Bobby Ralston | Civic Stadium | dnq |
| 1999 | CHN | Arizona Cubs | Ariz | Rk | team page | 55 | 18 | 37 | 20.5 | 249 | 379 | -130 | 8 | 7 | Carmelo Martinez | Fitch Park | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | CHA | Chicago White Sox | MLB-AL | MLB | team page | 161 | 75 | 86 | 21.5 | 777 | 870 | -93 | 2 | 9 | Jerry Manuel | Comiskey Park II | dnq |
| 1999 | CHA | Charlotte Knights | IL | AAA | team page | 144 | 82 | 62 | 1.5 | 836 | 763 | 73 | 2 | 3 | Tom Spencer | Knights Stadium | League Champions |
| 1999 | CHA | Birmingham Barons | Sou | AA | team page | 140 | 73 | 67 | 10.5 | 699 | 592 | 107 | 3 | 4 | Chris Cron | Hoover Metropolitan Stadium | dnq |
| 1999 | CHA | Winston-Salem Warthogs | Caro | A+ | team page | 138 | 63 | 75 | 16.5 | 635 | 675 | -40 | 4 | 7 | Jerry Terrell | Ernie Shore Field | dnq |
| 1999 | CHA | Burlington Bees | Midw | A | team page | 139 | 71 | 68 | 6.0 | 734 | 763 | -29 | 2 | 7 | Nick Capra | Community Field | League Champions |
| 1999 | CHA | Bristol White Sox | App | Rk | team page | 69 | 45 | 24 | 3.0 | 392 | 346 | 46 | 2 | 2 | Gary Pellant | Devault Memorial Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | CIN | Cincinnati Reds | MLB-NL | MLB | team page | 163 | 96 | 67 | 1.5 | 865 | 711 | 154 | 2 | 5 | Jack McKeon | Cinergy Field | dnq |
| 1999 | CIN | Indianapolis Indians | IL | AAA | team page | 144 | 75 | 69 | 9.5 | 788 | 773 | 15 | 2 | 7 | Dave Miley | Victory Field | dnq |
| 1999 | CIN | Chattanooga Lookouts | Sou | AA | team page | 140 | 78 | 62 | 5.5 | 765 | 682 | 83 | 2 | 2 | Phillip Wellman | Engel Stadium | Lost in Semi-Finals |
| 1999 | CIN | Clinton LumberKings | Midw | A | team page | 137 | 68 | 69 | 8.0 | 648 | 643 | 5 | 3 | 8 | Freddie Benavides | Riverview Stadium | Lost in 1st Round |
| 1999 | CIN | Rockford Reds | Midw | A | team page | 139 | 76 | 63 | 3.0 | 700 | 690 | 10 | 2 | 4 | Mike Rojas | Marinelli Field | Lost in 1st Round |
| 1999 | CIN | Billings Mustangs | Pio | Rk | team page | 75 | 42 | 33 | 6.0 | 489 | 444 | 45 | 2 | 4 | Russ Nixon | Cobb Field | Lost in Finals |
| 1999 | CIN | Gulf Coast Reds | GCL | Rk | team page | 60 | 23 | 37 | 14.0 | 220 | 328 | -108 | 6 | 14 | Donnie Scott | Ed Smith Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | CLE | Cleveland Indians | MLB-AL | MLB | team page | 162 | 97 | 65 | -- | 1009 | 860 | 149 | 1 | 2 | Mike Hargrove | Jacobs Field | Lost in 1st Round (Red Sox) |
| 1999 | CLE | Buffalo Bisons | IL | AAA | team page | 144 | 72 | 72 | 6.0 | 748 | 706 | 42 | 4 | 9 | Jeff Datz | Dunn Tire Park | dnq |
| 1999 | CLE | Akron Aeros | East | AA | team page | 140 | 69 | 71 | 2.0 | 714 | 702 | 12 | 6 | 7 | Joel Skinner | Canal Park | dnq |
| 1999 | CLE | Kinston Indians | Caro | A+ | team page | 137 | 79 | 58 | -- | 644 | 569 | 75 | 1 | 1 | Eric Wedge | Grainger Stadium | Lost in Semi-Finals |
| 1999 | CLE | Columbus Red Stixx | SAL | A | team page | 141 | 70 | 71 | 5.5 | 688 | 703 | -15 | 2 | 7 | Brad Komminsk | Golden Park | Lost in 1st Round |
| 1999 | CLE | Mahoning Valley Scrappers | NYPL | A- | team page | 76 | 43 | 33 | -- | 406 | 363 | 43 | 1 | 1 | Ted Kubiak | Cafaro Field | Lost in Finals |
| 1999 | CLE | Burlington Indians | App | Rk | team page | 70 | 21 | 49 | 20.0 | 336 | 429 | -93 | 5 | 10 | Jack Mull | Burlington Athletic Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | COL | Colorado Rockies | MLB-NL | MLB | team page | 162 | 72 | 90 | 28.0 | 906 | 1028 | -122 | 5 | 13 | Jim Leyland | Coors Field | dnq |
| 1999 | COL | Colorado Springs Sky Sox | PCL | AAA | team page | 139 | 66 | 73 | 14.0 | 793 | 830 | -37 | 2 | 9 | Bill Hayes | Sky Sox Stadium | dnq |
| 1999 | COL | Carolina Mudcats | Sou | AA | team page | 140 | 60 | 80 | 14.5 | 597 | 685 | -88 | 4 | 9 | Jay Loviglio | Five County Stadium | dnq |
| 1999 | COL | Salem Avalanche | Caro | A+ | team page | 138 | 69 | 69 | 10.5 | 574 | 600 | -26 | 3 | 4 | Ronnie Gideon | Salem Memorial Baseball Stadium | dnq |
| 1999 | COL | Asheville Tourists | SAL | A | team page | 141 | 64 | 77 | 19.0 | 701 | 743 | -42 | 6 | 11 | Jim Eppard | McCormick Field | dnq |
| 1999 | COL | Portland Rockies | Nwst | A- | team page | 76 | 39 | 37 | -- | 416 | 443 | -27 | 1 | 4 | Alan Cockrell | Civic Stadium | Lost in Finals |
| 1999 | COL | Arizona Rockies | Ariz | Rk | team page | 56 | 28 | 28 | 11.0 | 346 | 336 | 10 | 5 | 5 | P.J. Carey | Hi Corbett Field | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | DET | Detroit Tigers | MLB-AL | MLB | team page | 161 | 69 | 92 | 27.5 | 747 | 882 | -135 | 3 | 11 | Larry Parrish | Tiger Stadium | dnq |
| 1999 | DET | Toledo Mud Hens | IL | AAA | team page | 144 | 57 | 87 | 27.5 | 706 | 839 | -133 | 4 | 14 | Gene Roof | Ned Skeldon Stadium | dnq |
| 1999 | DET | Jacksonville Suns | Sou | AA | team page | 141 | 75 | 66 | -- | 792 | 710 | 82 | 1 | 3 | Dave Anderson | Sam W. Wolfson Baseball Park | dnq |
| 1999 | DET | Lakeland Tigers | FSL | A+ | team page | 138 | 65 | 73 | 21.5 | 638 | 681 | -43 | 7 | 10 | Mark Meleski | Joker Marchant Stadium | dnq |
| 1999 | DET | West Michigan Whitecaps | Midw | A | team page | 140 | 68 | 72 | 9.0 | 696 | 682 | 14 | 4 | 10 | Bruce Fields | Old Kent Park | dnq |
| 1999 | DET | Oneonta Tigers | NYPL | A- | team page | 75 | 41 | 34 | 0.5 | 313 | 302 | 11 | 3 | 5 | Kevin Bradshaw | Damaschke Field | dnq |
| 1999 | DET | Gulf Coast Tigers (East) | GCL | Rk | team page | 60 | 29 | 31 | 4.0 | 240 | 239 | 1 | 3 | 8 | Gary Green | Joker Marchant Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | MIA | Florida Marlins | MLB-NL | MLB | team page | 162 | 64 | 98 | 39.0 | 691 | 852 | -161 | 5 | 16 | John Boles | Pro Player Stadium | dnq |
| 1999 | MIA | Calgary Cannons | PCL | AAA | team page | 139 | 57 | 82 | 25.5 | 716 | 866 | -150 | 4 | 15 | Lynn Jones | Foothills Stadium | dnq |
| 1999 | MIA | Portland Sea Dogs | East | AA | team page | 142 | 65 | 77 | 27.0 | 646 | 708 | -62 | 4 | 9 | Frank Cacciatore | Hadlock Field | dnq |
| 1999 | MIA | Brevard County Manatees | FSL | A+ | team page | 135 | 61 | 74 | 10.5 | 591 | 686 | -95 | 5 | 12 | Dave Huppert | USSSA Space Coast Complex | dnq |
| 1999 | MIA | Kane County Cougars | Midw | A | team page | 137 | 78 | 59 | -- | 777 | 617 | 160 | 1 | 1 | Rick Renteria | Elfstrom Stadium | Lost in Semi-Finals |
| 1999 | MIA | Utica Blue Sox | NYPL | A- | team page | 75 | 42 | 33 | 0.5 | 357 | 338 | 19 | 2 | 2 | Ken Joyce | Donovan Stadium at Murnane Field | Lost in Semi-Finals |
| 1999 | MIA | Gulf Coast Marlins | GCL | Rk | team page | 60 | 25 | 35 | 14.0 | 239 | 274 | -35 | 4 | 12 | Jon Deeble | USSSA Space Coast Complex | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | HOU | Houston Astros | MLB-NL | MLB | team page | 162 | 97 | 65 | -- | 823 | 675 | 148 | 1 | 3 | Larry Dierker | Astrodome | Lost in 1st Round (Braves) |
| 1999 | HOU | New Orleans Zephyrs | PCL | AAA | team page | 140 | 55 | 85 | 27.0 | 674 | 750 | -76 | 4 | 16 | Tony Pena | Zephyr Field | dnq |
| 1999 | HOU | Jackson Generals | Tex | AA | team page | 140 | 68 | 72 | 6.0 | 628 | 632 | -4 | 3 | 5 | Jim Pankovits | Smith-Wills Stadium | dnq |
| 1999 | HOU | Kissimmee Cobras | FSL | A+ | team page | 137 | 71 | 66 | 1.5 | 652 | 595 | 57 | 2 | 6 | Manny Acta | Osceola County Stadium | League Champions |
| 1999 | HOU | Michigan Battle Cats | Midw | A | team page | 138 | 76 | 62 | -- | 810 | 732 | 78 | 1 | 3 | Al Pedrique | C.O. Brown Stadium | Lost in 1st Round |
| 1999 | HOU | Auburn Doubledays | NYPL | A- | team page | 76 | 39 | 37 | 4.0 | 399 | 364 | 35 | 3 | 8 | Lyle Yates | Falcon Park II | dnq |
| 1999 | HOU | Martinsville Astros | App | Rk | team page | 70 | 41 | 29 | -- | 366 | 323 | 43 | 1 | 3 | Brad Wellman | Hooker Field | League Champions |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | KCA | Kansas City Royals | MLB-AL | MLB | team page | 161 | 64 | 97 | 32.5 | 856 | 921 | -65 | 4 | 13 | Tony Muser | Kauffman Stadium | dnq |
| 1999 | KCA | Omaha Golden Spikes | PCL | AAA | team page | 141 | 81 | 60 | -- | 826 | 744 | 82 | 1 | 3 | Ron Johnson | Johnny Rosenblatt Stadium | Lost in Semi-Finals |
| 1999 | KCA | Wichita Wranglers | Tex | AA | team page | 140 | 83 | 57 | -- | 785 | 643 | 142 | 1 | 1 | John Mizerock | Lawrence-Dumont Stadium | League Champions |
| 1999 | KCA | Wilmington Blue Rocks | Caro | A+ | team page | 138 | 77 | 61 | -- | 653 | 607 | 46 | 1 | 3 | Jeff Garber | Daniel S. Frawley Stadium | Co-League Champions |
| 1999 | KCA | Charleston (Wv) AlleyCats | SAL | A | team page | 141 | 61 | 80 | 23.5 | 593 | 689 | -96 | 3 | 13 | Tom Poquette | Walt Powell Park | dnq |
| 1999 | KCA | Spokane Indians | Nwst | A- | team page | 76 | 44 | 32 | -- | 477 | 383 | 94 | 1 | 1 | Kevin Long | Avista Stadium | League Champions |
| 1999 | KCA | Gulf Coast Royals | GCL | Rk | team page | 60 | 33 | 27 | -- | 305 | 263 | 42 | 1 | 4 | Andre David | Baseball City Stadium | Lost in Semi-Finals |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | LAN | Los Angeles Dodgers | MLB-NL | MLB | team page | 162 | 77 | 85 | 23.0 | 793 | 787 | 6 | 3 | 8 | Davey Johnson | Dodger Stadium | dnq |
| 1999 | LAN | Albuquerque Dukes | PCL | AAA | team page | 139 | 65 | 74 | 15.0 | 742 | 805 | -63 | 3 | 11 | Mike Scioscia | Albuquerque Sports Stadium | dnq |
| 1999 | LAN | San Antonio Missions | Tex | AA | team page | 140 | 67 | 73 | 16.0 | 710 | 733 | -23 | 3 | 6 | Jimmy Johnson | Nelson W. Wolff Municipal Stadium | dnq |
| 1999 | LAN | San Bernardino Stampede | Calif | A+ | team page | 141 | 80 | 61 | -- | 764 | 697 | 67 | 1 | 2 | Rick Burleson | Arrowhead Credit Union Park | League Champions |
| 1999 | LAN | Vero Beach Dodgers | FSL | A+ | team page | 133 | 48 | 85 | 22.5 | 531 | 679 | -148 | 6 | 14 | Alvaro Espinoza | Holman Stadium | dnq |
| 1999 | LAN | Yakima Bears | Nwst | A- | team page | 76 | 33 | 43 | 11.0 | 418 | 504 | -86 | 4 | 7 | Dino Ebel | Yakima County Stadium | dnq |
| 1999 | LAN | Great Falls Dodgers | Pio | Rk | team page | 76 | 29 | 47 | 18.5 | 438 | 511 | -73 | 4 | 7 | Tony Harris | Legion Field | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | MIL | Milwaukee Brewers | MLB-NL | MLB | team page | 161 | 74 | 87 | 22.5 | 815 | 886 | -71 | 5 | 11 | Phil Garner, Jim Lefebvre | County Stadium | dnq |
| 1999 | MIL | Louisville RiverBats | IL | AAA | team page | 144 | 63 | 81 | 21.5 | 731 | 868 | -137 | 3 | 11 | Gary Allenson | Cardinal Stadium | dnq |
| 1999 | MIL | Huntsville Stars | Sou | AA | team page | 141 | 64 | 77 | 20.0 | 646 | 724 | -78 | 5 | 8 | Darrell Evans | Joe W. Davis Stadium | dnq |
| 1999 | MIL | Stockton Ports | Calif | A+ | team page | 140 | 57 | 83 | 31.0 | 654 | 802 | -148 | 5 | 9 | Bernie Moncallo, Carlos Ponce | Billy Hebert Field | dnq |
| 1999 | MIL | Beloit Snappers | Midw | A | team page | 139 | 59 | 80 | 20.0 | 680 | 767 | -87 | 5 | 14 | Don Money | Harry C. Pohlman Field | dnq |
| 1999 | MIL | Helena Brewers | Pio | Rk | team page | 75 | 47 | 28 | -- | 468 | 404 | 64 | 1 | 2 | Carlos Lezcano | Kindrick Field | Lost in Semi-Finals |
| 1999 | MIL | Ogden Raptors | Pio | Rk | team page | 76 | 26 | 50 | 22.5 | 437 | 541 | -104 | 4 | 8 | Jon Pont, Ed Sedar | Lindquist Field | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | MIN | Minnesota Twins | MLB-AL | MLB | team page | 160 | 63 | 97 | 33.0 | 686 | 845 | -159 | 5 | 14 | Tom Kelly | Hubert H. Humphrey Metrodome | dnq |
| 1999 | MIN | Salt Lake Buzz | PCL | AAA | team page | 141 | 73 | 68 | 0.5 | 814 | 807 | 7 | 2 | 6 | Phil Roof | Franklin Covey Field | Lost in Semi-Finals |
| 1999 | MIN | New Britain Rock Cats | East | AA | team page | 142 | 65 | 77 | 27.0 | 611 | 759 | -148 | 3 | 10 | John Russell | New Britain Stadium | dnq |
| 1999 | MIN | Fort Myers Miracle | FSL | A+ | team page | 139 | 60 | 79 | 27.0 | 686 | 716 | -30 | 8 | 13 | Mike Boulanger | Hammond Stadium | dnq |
| 1999 | MIN | Quad Cities River Bandits | Midw | A | team page | 139 | 77 | 62 | -- | 743 | 649 | 94 | 1 | 2 | Jose Marzan | John O'Donnell Stadium | Lost in 1st Round |
| 1999 | MIN | Elizabethton Twins | App | Rk | team page | 70 | 40 | 30 | 8.5 | 505 | 390 | 115 | 3 | 4 | Jon Mathews | Joe O'Brien Field | dnq |
| 1999 | MIN | Gulf Coast Twins | GCL | Rk | team page | 59 | 33 | 26 | 3.5 | 295 | 276 | 19 | 2 | 3 | Al Newman | Hammond Stadium | Lost in Finals |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | MON | Montreal Expos | MLB-NL | MLB | team page | 162 | 68 | 94 | 35.0 | 718 | 853 | -135 | 4 | 14 | Felipe Alou | Olympic Stadium | dnq |
| 1999 | MON | Ottawa Lynx | IL | AAA | team page | 144 | 59 | 85 | 19.0 | 647 | 725 | -78 | 6 | 13 | Jeff Cox | JetForm Park | dnq |
| 1999 | MON | Harrisburg Senators | East | AA | team page | 142 | 76 | 66 | 8.0 | 714 | 649 | 65 | 3 | 4 | Doug Sisson, Rick Sweet | Riverside Stadium | League Champions |
| 1999 | MON | Jupiter Hammerheads | FSL | A+ | team page | 138 | 73 | 65 | -- | 579 | 509 | 70 | 1 | 5 | Luis Dorante | Roger Dean Stadium | Lost in Semi-Finals |
| 1999 | MON | Cape Fear Crocs | SAL | A | team page | 140 | 75 | 65 | 9.0 | 616 | 613 | 3 | 2 | 5 | Frank Kremblas | J.P. Riddle Stadium | Lost in Finals |
| 1999 | MON | Vermont Expos | NYPL | A- | team page | 76 | 33 | 43 | 9.0 | 400 | 460 | -60 | 7 | 12 | Tony Barbone | Centennial Field | dnq |
| 1999 | MON | Gulf Coast Expos | GCL | Rk | team page | 60 | 29 | 31 | 10.0 | 215 | 264 | -49 | 2 | 9 | Billy Masse | Roger Dean Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | NYN | New York Mets | MLB-NL | MLB | team page | 163 | 97 | 66 | 6.5 | 853 | 711 | 142 | 2 | 4 | Bobby Valentine | Shea Stadium | Lost NLCS (Braves) |
| 1999 | NYN | Norfolk Tides | IL | AAA | team page | 140 | 77 | 63 | 4.5 | 675 | 712 | -37 | 3 | 4 | John Gibbons | Harbor Park | dnq |
| 1999 | NYN | Binghamton Mets | East | AA | team page | 142 | 54 | 88 | 38.0 | 635 | 767 | -132 | 6 | 12 | Doug Davis | Binghamton Municipal Stadium | dnq |
| 1999 | NYN | St. Lucie Mets | FSL | A+ | team page | 138 | 68 | 70 | 5.0 | 625 | 637 | -12 | 3 | 8 | Howard Freiling | Thomas J. White Stadium | dnq |
| 1999 | NYN | Columbia Bombers | SAL | A | team page | 141 | 83 | 58 | -- | 688 | 611 | 77 | 1 | 2 | Dave Engle | Capital City Stadium | Lost in Semi-Finals |
| 1999 | NYN | Pittsfield Mets | NYPL | A- | team page | 76 | 41 | 35 | 1.0 | 368 | 336 | 32 | 4 | 6 | Tony Tijerina | Wahconah Park | dnq |
| 1999 | NYN | Gulf Coast Mets | GCL | Rk | team page | 60 | 39 | 21 | -- | 324 | 247 | 77 | 1 | 1 | John Stephenson | Thomas J. White Stadium | League Champions |
| 1999 | NYN | Kingsport Mets | App | Rk | team page | 70 | 34 | 36 | 14.5 | 378 | 369 | 9 | 4 | 6 | Guy Conti | Hunter Wright Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | NYA | New York Yankees | MLB-AL | MLB | team page | 162 | 98 | 64 | -- | 900 | 731 | 169 | 1 | 1 | Joe Torre | Yankee Stadium I | Won World Series (Braves) |
| 1999 | NYA | Columbus Clippers | IL | AAA | team page | 141 | 83 | 58 | -- | 879 | 725 | 154 | 1 | 1 | Trey Hillman | Cooper Stadium | Lost in Semi-Finals |
| 1999 | NYA | Norwich Navigators | East | AA | team page | 142 | 78 | 64 | 14.0 | 755 | 680 | 75 | 2 | 3 | Lee Mazzilli | Senator Thomas J. Dodd Memorial Stadium | Lost in Finals |
| 1999 | NYA | Tampa Yankees | FSL | A+ | team page | 136 | 78 | 58 | 7.5 | 622 | 561 | 61 | 2 | 2 | Tom Nieto | Legends Field | dnq |
| 1999 | NYA | Greensboro Bats | SAL | A | team page | 141 | 77 | 64 | 6.0 | 733 | 646 | 87 | 2 | 3 | Stan Hough | World War Memorial Stadium | Lost in 1st Round |
| 1999 | NYA | Staten Island Yankees | NYPL | A- | team page | 74 | 39 | 35 | 2.0 | 372 | 333 | 39 | 5 | 7 | Joe Arnold | College of Staten Island Baseball Complex | dnq |
| 1999 | NYA | Gulf Coast Yankees | GCL | Rk | team page | 60 | 32 | 28 | 1.0 | 292 | 263 | 29 | 2 | 5 | Ken Dominguez | Yankee Complex | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | OAK | Oakland Athletics | MLB-AL | MLB | team page | 162 | 87 | 75 | 8.0 | 893 | 846 | 47 | 2 | 5 | Art Howe | Network Associates Coliseum | dnq |
| 1999 | OAK | Vancouver Canadians | PCL | AAA | team page | 142 | 84 | 58 | -- | 759 | 617 | 142 | 1 | 1 | Mike Quade | Nat Bailey Stadium | League Champions |
| 1999 | OAK | Midland RockHounds | Tex | AA | team page | 140 | 74 | 66 | 9.0 | 884 | 903 | -19 | 2 | 3 | Tony DeFrancesco | Christensen Stadium | dnq |
| 1999 | OAK | Modesto A's | Calif | A+ | team page | 140 | 88 | 52 | -- | 872 | 734 | 138 | 1 | 1 | Bob Geren | John Thurman Field | Lost in Semi-Finals |
| 1999 | OAK | Visalia Oaks | Calif | A+ | team page | 140 | 75 | 65 | 13.0 | 871 | 832 | 39 | 3 | 4 | Juan Navarette | Recreation Park | Lost in 1st Round |
| 1999 | OAK | Southern Oregon Timberjacks | Nwst | A- | team page | 76 | 38 | 38 | 1.0 | 489 | 486 | 3 | 2 | 5 | Greg Sparks | Miles Field | dnq |
| 1999 | OAK | Arizona Athletics | Ariz | Rk | team page | 56 | 39 | 17 | -- | 384 | 250 | 134 | 1 | 1 | John Kuehl | Papago Park Sports Facility | League Champions |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | PHI | Philadelphia Phillies | MLB-NL | MLB | team page | 162 | 77 | 85 | 26.0 | 841 | 846 | -5 | 3 | 9 | Terry Francona | Veterans Stadium | dnq |
| 1999 | PHI | Scranton/Wilkes-Barre Red Barons | IL | AAA | team page | 144 | 78 | 66 | -- | 728 | 715 | 13 | 1 | 5 | Marc Bombard | Lackawanna County Stadium | Lost in Semi-Finals |
| 1999 | PHI | Reading Phillies | East | AA | team page | 142 | 73 | 69 | 5.0 | 680 | 732 | -52 | 4 | 5 | Gary Varsho | GPU Stadium | dnq |
| 1999 | PHI | Clearwater Phillies | FSL | A+ | team page | 136 | 77 | 59 | 8.5 | 756 | 690 | 66 | 3 | 3 | Bill Dancy | Jack Russell Memorial Stadium | Lost in Semi-Finals |
| 1999 | PHI | Piedmont Boll Weevils | SAL | A | team page | 140 | 69 | 71 | 13.5 | 528 | 540 | -12 | 4 | 9 | Ken Oberkfell | Fieldcrest Cannon Stadium | dnq |
| 1999 | PHI | Batavia Muckdogs | NYPL | A- | team page | 76 | 42 | 34 | 1.0 | 379 | 341 | 38 | 2 | 4 | Greg Legg | Dwyer Stadium | Lost in Semi-Finals |
| 1999 | PHI | Gulf Coast Phillies | GCL | Rk | team page | 60 | 26 | 34 | 7.0 | 248 | 318 | -70 | 4 | 11 | Ramon Aviles | Carpenter Complex | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | PIT | Pittsburgh Pirates | MLB-NL | MLB | team page | 161 | 78 | 83 | 18.5 | 775 | 782 | -7 | 3 | 7 | Gene Lamont | Three Rivers Stadium | dnq |
| 1999 | PIT | Nashville Sounds | PCL | AAA | team page | 140 | 80 | 60 | 2.0 | 806 | 708 | 98 | 2 | 4 | Trent Jewett | Herschel Greer Stadium | dnq |
| 1999 | PIT | Altoona Curve | East | AA | team page | 140 | 67 | 73 | -- | 695 | 680 | 15 | 1 | 8 | Marty Brown | Blair County Ballpark | dnq |
| 1999 | PIT | Lynchburg Hillcats | Caro | A+ | team page | 137 | 64 | 73 | 12.5 | 680 | 706 | -26 | 3 | 6 | Scott Little | Lynchburg City Stadium | dnq |
| 1999 | PIT | Hickory Crawdads | SAL | A | team page | 140 | 70 | 70 | 12.5 | 705 | 702 | 3 | 3 | 6 | Tracy Woodson | L. P. Frans Stadium | Lost in Semi-Finals |
| 1999 | PIT | Williamsport Crosscutters | NYPL | A- | team page | 76 | 32 | 44 | 11.0 | 329 | 372 | -43 | 6 | 13 | Curtis Wilkerson | Bowman Field | dnq |
| 1999 | PIT | Gulf Coast Pirates | GCL | Rk | team page | 59 | 24 | 35 | 12.5 | 274 | 275 | -1 | 5 | 13 | Woody Huyke | Pirate City Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | SDN | San Diego Padres | MLB-NL | MLB | team page | 162 | 74 | 88 | 26.0 | 710 | 781 | -71 | 4 | 12 | Bruce Bochy | Qualcomm Stadium | dnq |
| 1999 | SDN | Las Vegas Stars | PCL | AAA | team page | 142 | 67 | 75 | 6.0 | 692 | 791 | -99 | 3 | 10 | Mike Ramsey | Cashman Field | dnq |
| 1999 | SDN | Mobile BayBears | Sou | AA | team page | 139 | 66 | 73 | 17.0 | 711 | 772 | -61 | 4 | 7 | Mike Basso | Hank Aaron Stadium | dnq |
| 1999 | SDN | Rancho Cucamonga Quakes | Calif | A+ | team page | 140 | 76 | 64 | 3.5 | 715 | 619 | 96 | 2 | 3 | Tom LeVasseur | Rancho Cucamonga Epicenter | Lost in Semi-Finals |
| 1999 | SDN | Fort Wayne Wizards | Midw | A | team page | 140 | 61 | 79 | 16.0 | 672 | 812 | -140 | 5 | 13 | Dan Simonds | Memorial Stadium | dnq |
| 1999 | SDN | Arizona Padres | Ariz | Rk | team page | 55 | 31 | 24 | 7.5 | 323 | 291 | 32 | 3 | 3 | Randy Whisler | Peoria Sports Complex | dnq |
| 1999 | SDN | Idaho Falls Braves | Pio | Rk | team page | 75 | 48 | 27 | -- | 546 | 440 | 106 | 1 | 1 | Don Werner | McDermott Field | Lost in Semi-Finals |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | SFN | San Francisco Giants | MLB-NL | MLB | team page | 162 | 86 | 76 | 14.0 | 872 | 831 | 41 | 2 | 6 | Dusty Baker | 3Com Park | dnq |
| 1999 | SFN | Fresno Grizzlies | PCL | AAA | team page | 142 | 73 | 69 | -- | 849 | 800 | 49 | 1 | 7 | Ron Roenicke | Pete Beiden Field | dnq |
| 1999 | SFN | Shreveport Captains | Tex | AA | team page | 140 | 71 | 69 | 3.0 | 613 | 585 | 28 | 2 | 4 | Shane Turner | Fair Grounds Field | Lost in Semi-Finals |
| 1999 | SFN | Bakersfield Blaze | Calif | A+ | team page | 140 | 64 | 76 | 24.0 | 685 | 787 | -102 | 0 | 8 | Keith Comstock | Sam Lynn Ballpark | dnq |
| 1999 | SFN | San Jose Giants | Calif | A+ | team page | 140 | 75 | 65 | 13.0 | 722 | 704 | 18 | 2 | 5 | Lenn Sakata | San Jose Municipal Stadium | Lost in Finals |
| 1999 | SFN | Salem-Keizer Volcanoes | Nwst | A- | team page | 76 | 37 | 39 | 2.0 | 426 | 432 | -6 | 3 | 6 | Frank Reberger | Volcanoes Stadium | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | SEA | Seattle Mariners | MLB-AL | MLB | team page | 162 | 79 | 83 | 16.0 | 859 | 905 | -46 | 3 | 7 | Lou Piniella | Safeco Field | dnq |
| 1999 | SEA | Tacoma Rainiers | PCL | AAA | team page | 139 | 69 | 70 | 13.5 | 689 | 664 | 25 | 2 | 8 | Dave Myers | Cheney Stadium | dnq |
| 1999 | SEA | New Haven Ravens | East | AA | team page | 141 | 59 | 82 | 32.5 | 610 | 625 | -15 | 5 | 11 | Dan Rohn | Yale Field | dnq |
| 1999 | SEA | Lancaster JetHawks | Calif | A+ | team page | 140 | 55 | 85 | 24.5 | 812 | 915 | -103 | 5 | 10 | Darrin Garner | Lancaster Municipal Stadium | dnq |
| 1999 | SEA | Wisconsin Timber Rattlers | Midw | A | team page | 138 | 72 | 66 | 6.5 | 721 | 653 | 68 | 3 | 5 | Steve Roadcap | Fox Cities Stadium | Lost in Finals |
| 1999 | SEA | Everett AquaSox | Nwst | A- | team page | 76 | 41 | 35 | 3.0 | 423 | 395 | 28 | 3 | 3 | Terry Pollreisz | Everett Memorial Stadium | dnq |
| 1999 | SEA | Arizona Mariners | Ariz | Rk | team page | 56 | 32 | 24 | 7.0 | 342 | 310 | 32 | 2 | 2 | Gary Thurman | Peoria Sports Complex | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | SLN | St. Louis Cardinals | MLB-NL | MLB | team page | 161 | 75 | 86 | 21.5 | 809 | 838 | -29 | 4 | 10 | Tony La Russa | Busch Stadium II | dnq |
| 1999 | SLN | Memphis Redbirds | PCL | AAA | team page | 138 | 74 | 64 | 7.0 | 743 | 738 | 5 | 3 | 5 | Gaylen Pitts | Tim McCarver Stadium | dnq |
| 1999 | SLN | Arkansas Travelers | Tex | AA | team page | 140 | 59 | 81 | 15.0 | 527 | 690 | -163 | 4 | 8 | Chris Maloney | Ray Winder Field | dnq |
| 1999 | SLN | Potomac Cannons | Caro | A+ | team page | 139 | 54 | 85 | 23.5 | 619 | 718 | -99 | 4 | 8 | Joseph Cunningham | G. Richard Pfitzner Stadium | dnq |
| 1999 | SLN | Peoria Chiefs | Midw | A | team page | 139 | 63 | 76 | 16.0 | 641 | 748 | -107 | 4 | 11 | Brian Rupp | Pete Vonachen Stadium at Meinen Field | dnq |
| 1999 | SLN | New Jersey Cardinals | NYPL | A- | team page | 76 | 30 | 46 | 12.0 | 320 | 377 | -57 | 8 | 14 | Jeff Shireman | Skylands Park | dnq |
| 1999 | SLN | Johnson City Cardinals | App | Rk | team page | 69 | 30 | 39 | 18.0 | 366 | 408 | -42 | 5 | 7 | Steven Turco | Howard Johnson Field | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | TBA | Tampa Bay Devil Rays | MLB-AL | MLB | team page | 162 | 69 | 93 | 29.0 | 772 | 913 | -141 | 5 | 12 | Larry Rothschild | Tropicana Field | dnq |
| 1999 | TBA | Durham Bulls | IL | AAA | team page | 143 | 83 | 60 | -- | 923 | 817 | 106 | 1 | 2 | Billy Evers | Durham Bulls Athletic Park | Lost in Finals |
| 1999 | TBA | Orlando Rays | Sou | AA | team page | 138 | 70 | 68 | 3.5 | 686 | 742 | -56 | 3 | 5 | Bill Russell | Tinker Field | League Champions |
| 1999 | TBA | St. Petersburg Devil Rays | FSL | A+ | team page | 137 | 74 | 63 | 12.0 | 579 | 585 | -6 | 4 | 4 | Roy Silver | Progress Energy Park | dnq |
| 1999 | TBA | Charleston (sc) RiverDogs | SAL | A | team page | 142 | 65 | 77 | 18.5 | 634 | 651 | -17 | 5 | 10 | Charlie Montoyo | Joseph P. Riley, Jr. Park | dnq |
| 1999 | TBA | Hudson Valley Renegades | NYPL | A- | team page | 76 | 42 | 34 | -- | 340 | 308 | 32 | 1 | 3 | Edwin Rodriguez | Dutchess Stadium | League Champions |
| 1999 | TBA | Princeton Devil Rays | App | Rk | team page | 70 | 25 | 45 | 16.0 | 384 | 544 | -160 | 4 | 9 | Bobby Ramos | H.P. Hunnicut Field | dnq |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | TEX | Texas Rangers | MLB-AL | MLB | team page | 162 | 95 | 67 | -- | 945 | 859 | 86 | 1 | 3 | Johnny Oates | The Ballpark in Arlington | Lost in 1st Round (Yankees) |
| 1999 | TEX | Oklahoma RedHawks | PCL | AAA | team page | 142 | 83 | 59 | -- | 787 | 696 | 91 | 1 | 2 | Greg Biagini | AT&T Bricktown Ballpark | Lost in Finals |
| 1999 | TEX | Tulsa Drillers | Tex | AA | team page | 140 | 74 | 66 | -- | 720 | 666 | 54 | 1 | 2 | Bob Jones | Drillers Stadium | Lost in Finals |
| 1999 | TEX | Charlotte Rangers | FSL | A+ | team page | 139 | 69 | 70 | 18.0 | 702 | 669 | 33 | 5 | 7 | Jim Byrd | Charlotte County Stadium | dnq |
| 1999 | TEX | Savannah Sand Gnats | SAL | A | team page | 140 | 62 | 78 | 13.0 | 607 | 749 | -142 | 4 | 12 | Paul Carey | Grayson Stadium | dnq |
| 1999 | TEX | Gulf Coast Rangers | GCL | Rk | team page | 60 | 37 | 23 | -- | 302 | 221 | 81 | 1 | 2 | Darryl Kennedy | Charlotte County Stadium | Lost in Semi-Finals |
| 1999 | TEX | Pulaski Rangers | App | Rk | team page | 69 | 48 | 21 | -- | 475 | 343 | 132 | 1 | 1 | Bruce Crabbe | Calfee Park | Lost in Finals |
| year | mlb org | team | league | level | link | g | w | l | gbl | rf | ra | diff | rank | lg rk | manager | ballpark | playoffs |
| 1999 | TOR | Toronto Blue Jays | MLB-AL | MLB | team page | 162 | 84 | 78 | 14.0 | 883 | 862 | 21 | 3 | 6 | Jim Fregosi | SkyDome | dnq |
| 1999 | TOR | Syracuse SkyChiefs | IL | AAA | team page | 144 | 73 | 71 | 5.0 | 744 | 752 | -8 | 3 | 8 | Pat Kelly | P&C Stadium | dnq |
| 1999 | TOR | Knoxville Smokies | Sou | AA | team page | 140 | 71 | 69 | 3.5 | 824 | 757 | 67 | 2 | 6 | Omar Malave | Bill Meyer Stadium | Lost in Semi-Finals |
| 1999 | TOR | Dunedin Blue Jays | FSL | A+ | team page | 137 | 86 | 51 | -- | 760 | 592 | 168 | 1 | 1 | Rocket Wheeler | Dunedin Stadium | Lost in Finals |
| 1999 | TOR | Hagerstown Suns | SAL | A | team page | 140 | 84 | 56 | -- | 731 | 616 | 115 | 1 | 1 | Rolando Pino | Municipal Stadium | Lost in 1st Round |
| 1999 | TOR | St. Catharines Stompers | NYPL | A- | team page | 76 | 34 | 42 | 9.0 | 332 | 393 | -61 | 5 | 10 | Eduardo Rodriguez | Community Park | dnq |
| 1999 | TOR | Medicine Hat Blue Jays | Pio | Rk | team page | 76 | 33 | 43 | 14.5 | 389 | 449 | -60 | 3 | 5 | Paul Elliott | Athletic Park | dnq |