| Year | Team Name | League | Division | W | L | Pct | Rank | Overall | Managers | Stadium | Top Draft Pick | Playoffs | |
| 2013 | Florida Atlantic | Owls | SBC | - | 0 | 0 | -- | 0 | 0-0 | John McCormack | dnq | ||
| 2012 | Florida Atlantic | Owls | SBC | - | 19 | 8 | .704 | 1 | 32-22 | John McCormack | FAU Baseball Stadium | R.J. Alvarez (#114) | dnq |
| 2011 | Florida Atlantic | Owls | SBC | - | 17 | 13 | .567 | 5 | 32-25 | John McCormack | FAU Baseball Stadium | Paul Davis (#537) | dnq |
| 2010 | Florida Atlantic | Owls | SBC | - | 21 | 9 | .700 | 1 | 37-24 | John McCormack | FAU Baseball Stadium | Ryan Bernal (#699) | CWS Regionals |
| 2009 | Florida Atlantic | Owls | SBC | - | 12 | 17 | .414 | 8 | 30-26 | John McCormack | FAU Baseball Stadium | Alex Pepe (#1090) | dnq |
| 2008 | Florida Atlantic | Owls | SBC | - | 15 | 12 | .556 | 4 | 32-27 | Kevin Cooney | FAU Baseball Stadium | Mike McKenna (#413) | dnq |
| 2007 | Florida Atlantic | Owls | SBC | - | 15 | 15 | .500 | 6 | 36-22 | Kevin Cooney | FAU Baseball Stadium | Robbie Widlansky (#339) | dnq |
| 2006 | Florida Atlantic | Owls | AtlSun | - | 14 | 16 | .467 | 6 | 30-28 | Kevin Cooney | FAU Baseball Stadium | Michael McBryde (#146) | dnq |
| 2005 | Florida Atlantic | Owls | AtlSun | - | 19 | 11 | .633 | 2 | 37-24 | Kevin Cooney | FAU Baseball Stadium | Conf. Finalists, CWS Regionals | |
| 2004 | Florida Atlantic | Owls | AtlSun | - | 20 | 10 | .667 | 3 | 47-17 | Kevin Cooney | FAU Baseball Stadium | Jeff Fiorentino (#79) | Conf. Champs,CWS Regionals |
| 2003 | Florida Atlantic | Owls | AtlSun | - | 25 | 8 | .758 | 1 | 47-16 | Kevin Cooney | FAU Baseball Stadium | Danny Core (#200) | CWS Regionals, #23 in Nation |
| 2002 | Florida Atlantic | Owls | AtlSun | - | 22 | 8 | .733 | 2 | 46-21 | Kevin Cooney | FAU Baseball Stadium | L.J. Biernbaum (#295) | Conf. Finalists, #19 in Nation, CWS Super Regionals |