| Year | Team Name | League | Division | Affilate | W | L | Pct | Rank | Managers | Stadium | Playoffs | |
| 2013 | Batavia | Muckdogs | NYPL | Pinckney | MIA | 1 | 1 | .500 | 3 | Dwyer Stadium | dnq | |
| 2012 | Batavia | Muckdogs | NYPL | Pinckney | STL | 44 | 32 | .579 | 2 | Dann Bilardello | Dwyer Stadium | dnq |
| 2011 | Batavia | Muckdogs | NYPL | Pinckney | STL | 37 | 38 | .493 | 4 | Dann Bilardello | Dwyer Stadium | dnq |
| 2010 | Batavia | Muckdogs | NYPL | Pinckney | STL | 45 | 29 | .608 | 1 | Dann Bilardello | Dwyer Stadium | Lost in Semi-Finals |
| 2009 | Batavia | Muckdogs | NYPL | Pinckney | STL | 37 | 39 | .487 | 4 | Mark DeJohn | Dwyer Stadium | dnq |
| 2008 | Batavia | Muckdogs | NYPL | Pinckney | STL | 46 | 28 | .622 | 1 | Mark DeJohn | Dwyer Stadium | League Champions |
| 2007 | Batavia | Muckdogs | NYPL | Pinckney | STL | 31 | 43 | .419 | 5 | Mark DeJohn | Dwyer Stadium | dnq |
| 2006 | Batavia | Muckdogs | NYPL | Pinckney | PHI | 35 | 38 | .479 | 4 | Steve Roadcap | Dwyer Stadium | dnq |
| 2005 | Batavia | Muckdogs | NYPL | Pinckney | PHI | 36 | 39 | .480 | Manny Amador | Dwyer Stadium | dnq | |
| 2004 | Batavia | Muckdogs | NYPL | Pinckney | PHI | 28 | 46 | .378 | 4 | Luis Melendez | Dwyer Stadium | dnq |
| 2003 | Batavia | Muckdogs | NYPL | Pinckney | PHI | 30 | 45 | .400 | 3 | Luis Melendez | Dwyer Stadium | dnq |
| 2002 | Batavia | Muckdogs | NYPL | Pinckney | PHI | 34 | 42 | .447 | 3 | Ronnie Ortegon | Dwyer Stadium | dnq |
| 2001 | Batavia | Muckdogs | NYPL | McNamara | PHI | 37 | 39 | .487 | 3 | Frank Klebe | Dwyer Stadium | dnq |
| 2000 | Batavia | Muckdogs | NYPL | McNamara | PHI | 39 | 37 | .513 | 2 | Frank Klebe | Dwyer Stadium | Lost in Semi-Finals |
| 1999 | Batavia | Muckdogs | NYPL | Pinckney | PHI | 42 | 34 | .553 | 2 | Greg Legg | Dwyer Stadium | Lost in Semi-Finals |
| 1998 | Batavia | Muckdogs | NYPL | Stedler | PHI | 43 | 33 | .566 | 1 | Frank Klebe | Dwyer Stadium | Lost in Semi-Finals |
| 1997 | Batavia | Clippers | NYPL | Stedler | PHI | 47 | 27 | .635 | 2 | Greg Legg | Dwyer Stadium | Lost in Finals |
| 1996 | Batavia | Clippers | NYPL | Stedler | PHI | 42 | 33 | .560 | 2 | Floyd Rayford | Dwyer Stadium | dnq |
| 1995 | Batavia | Clippers | NYPL | Pinckney | PHI | 41 | 34 | .547 | 1 | Al LeBoeuf | Dwyer Stadium | Lost in Semi-Finals |
| 1994 | Batavia | Clippers | NYPL | Stedler | PHI | 40 | 34 | .541 | 2 | Al LeBoeuf | Dwyer Stadium | dnq |
| 1993 | Batavia | Clippers | NYPL | Stedler | PHI | 38 | 39 | .494 | 3 | Al LeBoeuf | Dwyer Stadium | dnq |
| 1992 | Batavia | Clippers | NYPL | Pinckney | PHI | 36 | 34 | .514 | 2 | Ramon Aviles | Dwyer Stadium | dnq |
| 1991 | Batavia | Clippers | NYPL | McNamara-West | PHI | 38 | 40 | .487 | 3 | Ramon Aviles | Dwyer Stadium | dnq |
| 1990 | Batavia | Clippers | NYPL | Western | PHI | 41 | 35 | .539 | 2 | Ramon Aviles Dave Cash Tony Scott | Dwyer Stadium | dnq |
| 1989 | Batavia | Clippers | NYPL | Western | PHI | 37 | 39 | .487 | 3 | Don McCormack | Dwyer Stadium | dnq |
| 1988 | Batavia | Clippers | NYPL | Western | PHI | 31 | 44 | .413 | 4 | Don McCormack | Dwyer Stadium | dnq |
| 1987 | Batavia | Trojans | NYPL | Western | - | 23 | 54 | .299 | 6 | Art Mazmanian | Dwyer Stadium | dnq |
| 1986 | Batavia | Trojans | NYPL | Wrigley | CLE | 30 | 45 | .400 | 3 | Tom Chandler | Dwyer Stadium | dnq |
| 1985 | Batavia | Trojans | NYPL | Southern | CLE | 33 | 45 | .423 | 4 | Eddie Bane | Dwyer Stadium | dnq |
| 1984 | Batavia | Trojans | NYPL | Western | CLE | 41 | 35 | .539 | 3 | Eddie Bane | Dwyer Stadium | dnq |
| 1983 | Batavia | Trojans | NYPL | Western | CLE | 32 | 43 | .427 | 5 | Brian Doyle | Dwyer Stadium | dnq |
| 1982 | Batavia | Trojans | NYPL | Western | CLE | 33 | 40 | .452 | 5 | Dave Oliver | Dwyer Stadium | dnq |
| 1981 | Batavia | Trojans | NYPL | Western | CLE | 16 | 59 | .213 | 4 | Dave Oliver | Dwyer Stadium | dnq |
| 1980 | Batavia | Trojans | NYPL | Western | CLE | 31 | 42 | .425 | 2 | Rick Colzie | Dwyer Stadium | dnq |
| 1979 | Batavia | Trojans | NYPL | Wrigley | CLE | 37 | 34 | .521 | 3 | Tom Trebelhorn | Dwyer Stadium | dnq |
| 1978 | Batavia | Trojans | NYPL | Wrigley | CLE | 34 | 38 | .472 | 3 | Luis Isaac | Dwyer Stadium | dnq |
| 1977 | Batavia | Trojans | NYPL | West | CLE | 42 | 28 | .600 | 1 | dnq | ||