| East | W | L | Pct | GB |
| Philadelphia | 93 | 69 | .574 | -- |
| Florida | 87 | 75 | .537 | 6.0 |
| Atlanta | 86 | 76 | .531 | 7.0 |
| NY Mets | 70 | 92 | .432 | 23.0 |
| Washington | 59 | 103 | .364 | 34.0 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 2 | 75 | Kelly Dugan | CF | PHI Minors [A+] |
| June-Reg | 3 | 106 | Kyrell Hudson | CF | PHI Minors [A+] |
| June-Reg | 4 | 137 | Adam Buschini | 2B | SD Minors [AA] |
| June-Reg | 5 | 167 | Matt Way | LHP | Inactive |
| June-Reg | 6 | 197 | Steven Inch | RHP | PHI Minors [A] |
| June-Reg | 7 | 227 | Brody Colvin | RHP | PHI Minors [AA] (DL-7) |
| June-Reg | 8 | 257 | Jonathan Singleton | 1B | HOU |
| June-Reg | 9 | 287 | Aaron Altherr | CF | PHI Minors [A+] |
| June-Reg | 10 | 317 | Josh Zeid | RHP | HOU Minors [AAA] |
| June-Reg | 11 | 347 | Jeremy Barnes | SS | Free Agent |
| June-Reg | 12 | 377 | Nicholas Hernandez | LHP | PHI Minors [A+] |
| June-Reg | 13 | 407 | Ryan Sasaki | LHP | Inactive |
| June-Reg | 14 | 437 | Jake Stewart | OF | DET Minors [A] |
| June-Reg | 15 | 467 | Austin Hyatt | RHP | PHI Minors [AA] |
| June-Reg | 16 | 497 | Andrew Susac | C | SF Minors [AA] |
| June-Reg | 17 | 527 | Michael Dabbs | OF | Inactive |
| June-Reg | 18 | 557 | Carl Uhl | OF | Retired |
| June-Reg | 19 | 587 | Stephen Batts | 1B | Inactive |
| June-Reg | 20 | 617 | Darin Ruf | 1B | PHI Minors [AAA] 40m |
| June-Reg | 21 | 647 | Chase Johnson | RHP | BAL Minors |
| June-Reg | 22 | 677 | Kyle Lafrenz | C | Minors |
| June-Reg | 23 | 707 | Evan Porter | SS | Assistant Coach - University of Nebraska-Omaha (2013) |
| June-Reg | 24 | 737 | Justin Long | RHP | Retired |
| June-Reg | 25 | 767 | Eric Massingham | RHP | Inactive |
| June-Reg | 26 | 797 | Brian Gump | OF | Inactive |
| June-Reg | 27 | 827 | Marlon Mitchell | C | Inactive |
| June-Reg | 28 | 857 | Justin Beal | RHP | Inactive |
| June-Reg | 29 | 887 | Mark Doll | RHP | Retired |
| June-Reg | 30 | 917 | Stephen Kohlscheen | RHP | SEA Minors [AA] |
| June-Reg | 31 | 947 | David Doss | C | Inactive |
| June-Reg | 32 | 977 | Kevin Angelle | LHP | Inactive |
| June-Reg | 33 | 1007 | Colin Kleven | RHP | PHI Minors [A+] (DL-7) |
| June-Reg | 34 | 1037 | A.J. Griffin | RHP | OAK 40m |
| June-Reg | 35 | 1067 | Phil Aviola | C | Retired |
| June-Reg | 36 | 1097 | Matthew McConnell | 2B | Inactive |
| June-Reg | 37 | 1127 | Brodie Greene | 2B | CIN Minors [AA] |
| June-Reg | 38 | 1157 | Cory Wine | 1B | Inactive |
| June-Reg | 39 | 1187 | Sam Kidd | RHP | College |
| June-Reg | 40 | 1217 | Robert Amaro | 3B | College |
| June-Reg | 41 | 1247 | Jeff Gelalich | CF | CIN Minors [A] |
| June-Reg | 42 | 1277 | Matt Laney | LHP | Free Agent |
| June-Reg | 43 | 1307 | Francois Lafreniere | RHP | ATL Minors [A] |
| June-Reg | 44 | 1337 | Brian Feekin | LHP | Inactive |
| June-Reg | 45 | 1367 | Richard Bain | OF | Inactive |
| June-Reg | 46 | 1397 | Jeff Ames | RHP | TB Minors [A] |
| June-Reg | 47 | 1427 | Ryan Bollinger | 1B | CHW Minors [A] |
| June-Reg | 48 | 1457 | Wander Nunez | RF | Inactive |
| June-Reg | 49 | 1487 | Chris Gosik | LF | College |
| June-Reg | 50 | 1517 | David Hissey | OF | Retired |