| West | W | L | Pct | GB |
| San Diego | 82 | 80 | .506 | -- |
| Arizona | 77 | 85 | .475 | 5.0 |
| SF Giants | 75 | 87 | .463 | 7.0 |
| LA Dodgers | 71 | 91 | .438 | 11.0 |
| Colorado | 67 | 95 | .414 | 15.0 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 1 | 18 | Cesar Carrillo | P | DET Minors [A+] |
| June-Reg | 1 | 35 | Cesar Ramos | P | TB 40m |
| June-Reg | 2 | 66 | Chase Headley | 3b | SD 40m |
| June-Reg | 2 | 76 | Nick Hundley | c | SD 40m |
| June-Reg | 3 | 98 | Josh Geer | P | SD Minors [AA] |
| June-Reg | 4 | 128 | Mike Baxter | of | NYM 40m |
| June-Reg | 5 | 158 | Seth Johnston | ss | Retired |
| June-Reg | 6 | 188 | Neil Jamison | P | Retired |
| June-Reg | 7 | 218 | Will Venable | OF | SD 40m |
| June-Reg | 8 | 248 | John Madden | P | Retired |
| June-Reg | 9 | 278 | Casey Smith | 1b | Retired |
| June-Reg | 10 | 308 | Josh Alley | OF | Inactive |
| June-Reg | 11 | 338 | Josh Tomlin | P | CLE Minors (DL-60) |
| June-Reg | 12 | 368 | Aaron Breit | P | Inactive |
| June-Reg | 13 | 398 | Arnold Hughey | P | Retired |
| June-Reg | 14 | 428 | Billy Richardson | SS | Retired |
| June-Reg | 15 | 458 | Josh Romanski | P | NYY Minors [AA] (DL-7) |
| June-Reg | 16 | 488 | Brent Carter | P | Retired |
| June-Reg | 17 | 518 | Chad Decker | P | Retired |
| June-Reg | 18 | 548 | Mike Sansoe | of | Retired |
| June-Reg | 19 | 578 | Gabriel Fargas | P | Inactive |
| June-Reg | 20 | 608 | Chad Steiner | 3b | Retired |
| June-Reg | 21 | 638 | Brian Cavanaugh | OF | Retired |
| June-Reg | 22 | 668 | Drew Davidson | of | Retired |
| June-Reg | 23 | 698 | Josh Conover | P | Retired |
| June-Reg | 24 | 728 | John Slone | C | Retired |
| June-Reg | 25 | 758 | Grant Varnell | P | Retired |
| June-Reg | 26 | 788 | Jon Link | P | Free Agent |
| June-Reg | 27 | 818 | Ernest Gill | 1b | Retired |
| June-Reg | 28 | 848 | Brandon Higelin | P | Retired |
| June-Reg | 29 | 878 | Rey Garramone | P | Retired |
| June-Reg | 30 | 908 | Todd Conerly | P | Inactive |
| June-Reg | 31 | 938 | Tae Kwon | P | Inactive |
| June-Reg | 32 | 968 | Tyson Ford | P | Inactive |
| June-Reg | 33 | 998 | Adam Gold | P | Retired |
| June-Reg | 34 | 1028 | Geoff Vandel | P | Retired |
| June-Reg | 35 | 1058 | Andrew Morgan | c | Inactive |
| June-Reg | 36 | 1088 | Gary Moran | P | ATL Minors [AA] (DL-7) |
| June-Reg | 37 | 1118 | Drew Miller | P | Inactive |
| June-Reg | 38 | 1148 | Jeremy McBryde | P | SD Minors [AA] |
| June-Reg | 39 | 1178 | Patrick Norris | of | Inactive |
| June-Reg | 40 | 1207 | Donnie Snow | P | Inactive |
| June-Reg | 41 | 1236 | Bret Bochsler | P | Inactive |
| June-Reg | 42 | 1265 | Terrence Dayleg | SS | MIA Minors [A+] |
| June-Reg | 43 | 1294 | Justin Worby | c | Inactive |
| June-Reg | 44 | 1323 | Troy Dawe | P | Inactive |
| June-Reg | 45 | 1352 | Daniel Towe | C | Inactive |
| June-Reg | 46 | 1381 | Jeremy Shelby | OF | Inactive |
| June-Reg | 47 | 1410 | Mark Letchworth | of | Retired |
| June-Reg | 48 | 1438 | Carson Bryant | P | Retired |
| June-Reg | 49 | 1465 | Josh Thomas-Dotson | of | Retired |
| June-Reg | 50 | 1492 | Jason Ogata | SS | Retired |