| Matt Alexander | of | 9 | 22 | - | NCAA | 53 | 218 | 42 | 83 | 14 | 0 | 3 | 29 | 5 | 3 | 10 | 23 | 7 | | 0 | 0 | 5 | .381 | .426 | .486 | 912 | 106 | 235 | 143 | - | - | .417 |
| Charlie Reschke | 2b-of | 7 | 21 | - | NCAA | 53 | 203 | 43 | 69 | 15 | 1 | 7 | 38 | 8 | 4 | 10 | 28 | 3 | | 3 | 4 | 4 | .340 | .373 | .527 | 900 | 107 | 223 | 149 | - | - | .360 |
| Ben Stanczyk | p | 8 | 21 | UDFA: 2004 | AA | 49 | 195 | 35 | 73 | 10 | 1 | 10 | 43 | 2 | 2 | 7 | 19 | 6 | | 0 | 6 | 5 | .374 | .402 | .590 | 992 | 115 | 214 | 135 | - | - | .366 |
| Ross McCoy | 3b-of | 15 | 20 | - | Ind | 50 | 185 | 37 | 60 | 11 | 3 | 6 | 36 | 7 | 3 | 14 | 49 | 1 | | 1 | 0 | 3 | .324 | .375 | .514 | 889 | 95 | 201 | 132 | - | - | .415 |
| Brooks Graff | p | 54 | - | - | NCAA | 40 | 152 | 27 | 47 | 6 | 0 | 5 | 24 | 2 | 1 | 8 | 29 | 5 | | 0 | 1 | 5 | .309 | .361 | .447 | 809 | 68 | 166 | 112 | - | - | .353 |
| Sam Jansen | p | 46 | 23 | - | Ind | 32 | 125 | 20 | 38 | 3 | 2 | 0 | 10 | 1 | 3 | 10 | 10 | 1 | | 1 | 0 | 2 | .304 | .360 | .360 | 720 | 45 | 137 | 93 | - | - | .330 |
| Jeremy Wilson | c | 39 | 21 | 2001-40-1198 | NCAA | 40 | 108 | 16 | 24 | 7 | 0 | 3 | 21 | 0 | 0 | 15 | 38 | 0 | | 0 | 2 | 0 | .222 | .312 | .370 | 682 | 40 | 125 | 86 | - | - | .304 |
| Zak Rivera | 1b | 43 | 21 | - | NCAA | 43 | 107 | 19 | 28 | 7 | 0 | 0 | 18 | 0 | 0 | 20 | 14 | 5 | | 0 | 1 | 4 | .262 | .398 | .327 | 726 | 35 | 133 | 84 | - | - | .298 |
| Joe Nowicki | of | 35 | 21 | UDFA: 2006 | AA | 28 | 86 | 20 | 31 | 6 | 0 | 2 | 15 | 1 | 0 | 4 | 10 | 4 | | 0 | 2 | 2 | .360 | .406 | .500 | 906 | 43 | 96 | 59 | - | - | .382 |
| Blake Kangas | | - | - | - | NCAA | 36 | 84 | 6 | 14 | 3 | 0 | 2 | 14 | 0 | 0 | 10 | 30 | 0 | | 2 | 2 | 2 | .167 | .250 | .274 | 524 | 23 | 98 | 76 | - | - | .222 |
| Nick Wichser | of | 58 | 19 | - | NCAA | 29 | 81 | 13 | 24 | 4 | 1 | 0 | 13 | 1 | 1 | 5 | 18 | 7 | | 0 | 0 | 1 | .296 | .387 | .370 | 757 | 30 | 93 | 59 | - | - | .381 |
| Rob Michalkiewicz | | - | - | - | NCAA | 25 | 66 | 12 | 14 | 0 | 0 | 2 | 8 | 0 | 0 | 9 | 22 | 5 | | 0 | 0 | 4 | .212 | .350 | .303 | 653 | 20 | 80 | 56 | - | - | .286 |
| Steve Sanfilippo | ss-3b | - | 22 | - | NCAA | 16 | 55 | 9 | 15 | 2 | 1 | 0 | 5 | 1 | 0 | 4 | 10 | 1 | | 1 | 2 | 0 | .273 | .323 | .345 | 668 | 19 | 63 | 43 | - | - | .319 |
| Matt Curran | if | - | 21 | - | NCAA | 19 | 44 | 6 | 16 | 1 | 1 | 1 | 5 | 0 | 1 | 9 | 6 | 0 | | 1 | 0 | 3 | .364 | .472 | .500 | 972 | 22 | 54 | 33 | - | - | .405 |
| Dan Navarette | | - | - | - | NCAA | 24 | 40 | 6 | 11 | 2 | 0 | 0 | 4 | 2 | 2 | 2 | 7 | 1 | | 0 | 0 | 1 | .275 | .326 | .325 | 651 | 13 | 43 | 32 | - | - | .333 |
| Shane Davis | p | - | - | - | NCAA | 11 | 27 | 3 | 7 | 1 | 0 | 0 | 2 | 0 | 0 | 1 | 6 | 1 | | 1 | 0 | 0 | .259 | .310 | .296 | 607 | 8 | 30 | 21 | - | - | .333 |
| Brent Beuchel | c | - | 22 | - | NCAA | 8 | 8 | 1 | 1 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | | 0 | 0 | 1 | .125 | .222 | .125 | 347 | 1 | 9 | 8 | - | - | .143 |
| Ben Stanczyk | 3 | 21 | UDFA: 2004 | AA | 7 | 3 | 3.43 | 18 | 11 | 4 | 0 | | 4 | 94.1 | 86 | 48 | 36 | 9 | 20 | 95 | 2 | | 1.12 | 8.20 | 0.86 | 1.91 | 9.06 | 0.21 |
| Rob Michalkiewicz | 34 | - | - | NCAA | 3 | 6 | 3.95 | 15 | 8 | 2 | 0 | | 0 | 66.0 | 72 | 39 | 29 | 6 | 28 | 36 | 2 | | 1.52 | 9.82 | 0.82 | 3.82 | 4.91 | 0.78 |
| Korey Keller | 29 | - | - | NCAA | 5 | 4 | 6.44 | 14 | 13 | 1 | 0 | | 0 | 65.2 | 86 | 60 | 47 | 6 | 38 | 50 | 14 | | 1.89 | 11.79 | 0.82 | 5.21 | 6.85 | 0.76 |
| Aaron Bushong | 32 | - | - | NCAA | 2 | 8 | 9.85 | 13 | 12 | 1 | 0 | | 0 | 56.2 | 101 | 76 | 62 | 12 | 23 | 23 | 5 | | 2.19 | 16.04 | 1.91 | 3.65 | 3.65 | 1.00 |
| Jed Dolske | 31 | 21 | - | NCAA | 3 | 5 | 5.17 | 31 | 0 | 0 | 0 | | 6 | 55.2 | 72 | 45 | 32 | 3 | 23 | 27 | 4 | | 1.71 | 11.64 | 0.49 | 3.72 | 4.37 | 0.85 |
| Sam Jansen | 53 | 23 | - | Ind | 2 | 2 | 7.38 | 9 | 6 | 0 | 0 | | 0 | 39.0 | 49 | 47 | 32 | 3 | 29 | 29 | 3 | | 2.00 | 11.31 | 0.69 | 6.69 | 6.69 | 1.00 |
| Leroy Pederson | 37 | 20 | - | NCAA | 1 | 0 | 8.76 | 14 | 1 | 0 | 0 | | 0 | 24.2 | 41 | 32 | 24 | 2 | 16 | 22 | 4 | | 2.31 | 14.96 | 0.73 | 5.84 | 8.03 | 0.73 |
| Jeremy Leibfried | - | 20 | - | NCAA | 0 | 2 | 15.23 | 7 | 2 | 0 | 0 | | 0 | 13.0 | 25 | 23 | 22 | 3 | 12 | 5 | 3 | | 2.85 | 17.31 | 2.08 | 8.31 | 3.46 | 2.40 |
| Jay Molstad | - | - | - | NCAA | 0 | 0 | 19.29 | 3 | 0 | 0 | 0 | | 0 | 2.1 | 5 | 5 | 5 | 0 | 6 | 0 | 0 | | 4.71 | 19.29 | 0.00 | 23.14 | 0.00 | -- |
| Blake Kangas | - | - | - | NCAA | 0 | 0 | 30.86 | 5 | 0 | 0 | 0 | | 0 | 2.1 | 4 | 8 | 8 | 0 | 7 | 3 | 6 | | 4.71 | 15.43 | 0.00 | 27.00 | 11.57 | 2.33 |