| 1 | Danny Bean | P | NCAA | | | | | | - | | | UDFA | | |
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| 18 | Chris Carrara | IF | A | 5-10 | 180 | Right | Right | 5/11/1985 | 19 | Pittsburgh,Pennsylvania | 2007 | 30 | 934 | NYY |
| 11 | Daniel Carte | OF | AA | 6-0 | 190 | Right | Right | 5/18/1984 | 20 | Hurricane,West Virginia | 2005 | 2 | 52 | COL |
| 37 | Chris Carter | | NCAA | | | | | | - | | | UDFA | | |
| 7 | Jacob Dempsey | OF | A- | 6-1 | 225 | Left | Right | 9/24/1983 | 20 | Virginia Beach,Virginia | 2006 | 21 | 637 | PHI |
| 27 | Kyle Duff | | NCAA | | | | | | - | | | UDFA | | |
| 26 | Chase Edwards | | NCAA | | | | | | - | | | UDFA | | |
| 10 | Ben Ehrlich | | NCAA | | | | | | - | | | UDFA | | |
| 2 | Brian Haney | | NCAA | | | | | | - | | | UDFA | | |
| 3 | Mike Honce | OF-P | Ind | 6-0 | 195 | Right | Right | 8/22/1983 | 20 | Bridgeport,West Virginia | 2002 | 29 | 858 | KC |
| 24 | Tommy Lentz | | NCAA | | | | | | - | | | UDFA | | |
| 25 | Chris Leroux | P | MLB | 6-6 | 210 | Left | Right | 4/14/1984 | 20 | Montreal,Quebec | 2005 | 7 | 216 | FLA |
| 5 | Matt Matkovich | 3B-2B | NCAA | 5-11 | 195 | Left | Right | | - | Glen Dale,West Virginia | | UDFA | | |
| 14 | Tim McKay | 1B | A+ | | | | | | - | | | UDFA | | |
| 16 | Ryan Nasiatka | | NCAA | | | | | | - | | | UDFA | | |
| 40 | Grant Neidenfeuhr | | NCAA | | | | | | - | | | UDFA | | |
| 41 | Thomas Olejniczak | | NCAA | | | | | | - | | 2000 | 43 | 1270 | CHC |
| 29 | Jeff Reeves | P | NCAA | 6-3 | 205 | Left | Right | 2/14/1981 | 23 | Scarborough,Ontario | | UDFA | | |
| 6 | Matt Repec | SS | AA | 6-1 | 190 | Right | Right | 8/30/1983 | 20 | Boardman,Ohio | 2006 | 27 | 798 | COL |
| 15 | Alan Robbins | C | A+ | 6-0 | 205 | Left | Right | 7/7/1983 | 20 | Bridgeport,West Virginia | 2006 | 32 | 967 | PHI |
| 4 | Kyle Roberson | P | RK | 6-2 | 205 | Right | Right | 3/21/1987 | 17 | Clay,Alabama | 2009 | UDFA | | LAA |
| 22 | Mark Schmidt | | NCAA | | | | | | - | | | UDFA | | |
| 36 | David Scoggin | | NCAA | | | | | | - | | | UDFA | | |
| 21 | Jonathan Settle | | NCAA | | | | | | - | | | UDFA | | |
| 30 | Kevin Slowey | P | MLB | 6-3 | 190 | Right | Right | 5/4/1984 | 20 | Conroe,Texas | 2005 | 2 | 73 | MIN |
| 32 | Bennett Stapf | | NCAA | | | | | | - | | | UDFA | | |
| 9 | Jason Terry | P | RK | 6-3 | 200 | Left | Left | 9/26/1982 | 21 | Easley,South Carolina | 2005 | UDFA | | CHC |
| 12 | Jon Wilson | P | A+ | 6-1 | 233 | Right | Right | 4/28/1983 | 21 | Lock Haven,Pennsylvania | 2005 | 27 | 819 | TEX |