| East | W | L | Pct | GB |
| Boston | 86 | 58 | .597 | -- |
| NY Yankees | 79 | 65 | .549 | 7.0 |
| Baltimore | 71 | 73 | .493 | 15.0 |
| Detroit | 60 | 84 | .417 | 26.0 |
| Toronto | 56 | 88 | .389 | 30.0 |
| Phase | Rnd | Ovl | Player | Pos | Current Status |
| June-Reg | 1 | 17 | Roy Halladay | P | PHI Minors (DL-15) 40m |
| June-Reg | 2 | 47 | Craig Wilson | C | Retired |
| June-Reg | 3 | 76 | Jeff Maloney | SS | Retired |
| June-Reg | 4 | 104 | Mike Whitlock | 1B | Retired |
| June-Reg | 5 | 132 | Jay Veniard | P | Retired |
| June-Reg | 6 | 160 | Blaine Fortin | C | Retired |
| June-Reg | 7 | 188 | Jeremi Rudolph | OF | Retired |
| June-Reg | 8 | 216 | Dave Marciniak | SS | Retired |
| June-Reg | 9 | 244 | Kyle Burchart | P | Retired |
| June-Reg | 10 | 272 | Ryan Freel | 2B | Deceased |
| June-Reg | 11 | 300 | Allen Levrault | P | Retired |
| June-Reg | 12 | 328 | John Curl | 1B | Retired |
| June-Reg | 13 | 356 | Ted Lilly | p | LAD 40m |
| June-Reg | 14 | 384 | Jason Pomar | p | Retired |
| June-Reg | 15 | 412 | Robert Corraro | p | Inactive |
| June-Reg | 16 | 440 | Bill Brabec | p | Retired |
| June-Reg | 17 | 468 | Johnny Byrd | p | Retired |
| June-Reg | 18 | 496 | Doug Dent | p | Retired |
| June-Reg | 19 | 524 | Jaron Seabury | p | Retired |
| June-Reg | 20 | 552 | Braxton Whitehead | 1B-C | Retired |
| June-Reg | 21 | 580 | Logan Miller | C | Retired |
| June-Reg | 22 | 608 | Scott Fitterer | p | Retired |
| June-Reg | 23 | 636 | Brian Bejarano | 3B | Retired |
| June-Reg | 24 | 664 | Mark Curtis | p | Retired |
| June-Reg | 25 | 692 | John Mitchell | p | Retired |
| June-Reg | 26 | 720 | John Kehoe | 2B | Retired |
| June-Reg | 27 | 748 | Robert Medina | OF | Retired |
| June-Reg | 28 | 776 | Chris Hayes | 3B | Retired |
| June-Reg | 29 | 804 | Brian Williams | C | Retired |
| June-Reg | 30 | 832 | Brandon Duckworth | p | BOS Minors [AAA] |
| June-Reg | 31 | 860 | John Douglas | SS | Retired |
| June-Reg | 32 | 888 | Stanley Gay | p | Inactive |
| June-Reg | 33 | 916 | Todd Moser | p | Inactive |
| June-Reg | 34 | 944 | Andrew McCormick | Of | Retired |
| June-Reg | 35 | 972 | Jonathan Herring | p | Retired |
| June-Reg | 37 | 1028 | Thomas Taylor | SS | Inactive |
| June-Reg | 38 | 1056 | Tyrone Gracia | 3B | Retired |
| June-Reg | 40 | 1112 | Brian Leach | p | Retired |
| June-Reg | 41 | 1140 | Jesse Bechard | SS | Retired |
| June-Reg | 42 | 1168 | Thomas Peck | of | Retired |
| June-Reg | 43 | 1196 | Justin Johnson | of | Inactive |
| June-Reg | 44 | 1224 | Brian Fitts | p | Retired |
| June-Reg | 45 | 1250 | Joe Pierson | SS | Inactive |
| June-Reg | 46 | 1274 | Ryan Cisar | SS | Retired |
| June-Reg | 47 | 1298 | Antonio Jackson | of | Inactive |
| June-Reg | 48 | 1320 | Paxton Stewart | 1B | Retired |
| June-Reg | 49 | 1342 | Derek Hines | of | Retired |
| June-Reg | 50 | 1364 | Jeremy Satterfield | p | Retired |
| June-Reg | 51 | 1383 | Kyle Adams | p | Inactive |
| June-Reg | 52 | 1403 | Albert Colon | of | Inactive |
| June-Reg | 53 | 1422 | Ryan Bundy | C | Retired |
| June-Reg | 54 | 1440 | Allen Greene | 1B | Retired |
| June-Reg | 55 | 1458 | Travis Grant | p | Inactive |
| June-Reg | 56 | 1474 | Sidney Harden | p | Inactive |
| June-Reg | 57 | 1489 | Pat Schuttz | of | Inactive |
| June-Reg | 58 | 1503 | Doug Franklin | 2B | Inactive |
| June-Reg | 59 | 1516 | Andy Tarpley | p | Retired |