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| | 1 | 21 | Boof Bonser | $$ | P | 18 | 10/14/1981 | 6-4 | 230 | R | R | MLB | 2006-2007 | Gibbs High School (St. Petersburg,FL) |
| | 2 | 61 | Lance Niekro | | IF | 21 | 1/29/1979 | 6-3 | 210 | R | R | MLB | 2003-2007 | Florida Southern College |
| | 3 | 91 | Brion Treadway | | P | 21 | 4/1/1979 | 6-4 | 200 | R | R | AA | | University of North Carolina |
| | 4 | 121 | Ryan Hannaman | $$ | P | 18 | 8/28/1981 | 6-3 | 190 | L | L | A+ | | Murphy High School (Mobile,AL) |
| | 5 | 151 | Kyle Gross | | P | 21 | 12/11/1978 | 6-4 | 212 | R | R | A+ | | Cuesta College |
| | 6 | 181 | Chad Ashlock | | P | 21 | 7/17/1978 | 6-2 | 200 | R | R | A- | | Southern Nazarene University (Okla.) |
| | 7 | 211 | Erick Threets | | P | 18 | 11/4/1981 | 6-5 | 220 | L | L | MLB | 2007-2007 | Modesto Junior College |
| | 8 | 241 | Nick Wilfong | | OF | 21 | 11/6/1978 | 6-1 | 190 | L | R | A+ | | University of Missouri |
| | 9 | 271 | Edwin Maldonado | | IF | 21 | 1/3/1979 | 6-0 | 175 | R | R | A+ | - | Oklahoma Christian University |
| | 10 | 301 | Adam Shabala | $$ | OF | 22 | 2/6/1978 | 6-1 | 190 | L | R | MLB | 2005-2005 | University of Nebraska |
| | 11 | 331 | Jackson Markert | | P | 21 | 2/9/1979 | 6-6 | 215 | R | R | AA | | Oral Roberts University |
| | 12 | 361 | Elliot Strankman | | SS | 23 | 1/13/1977 | 6-1 | 185 | R | R | AA | | Lewis and Clark College |
| | 13 | 391** | Justin Knoedler | | P | 19 | 7/17/1980 | 6-2 | 205 | R | R | MLB | 2004-2006 | Lincoln Land Community College |
| | 14 | 421 | Jason Farmer | | P | 21 | 5/6/1979 | 6-2 | 200 | R | R | A+ | | Riverside Community College |
| | 15 | 451 | Matthew Faas | | P | 23 | 1/5/1977 | 6-2 | 205 | R | R | A- | | Florida Southern College |
| | 16 | 481 | Anthony Pannone | | P | 18 | 7/7/1981 | 6-3 | 210 | R | R | AAA | | Seward County Community College |
| | 17 | 511 | Rafael Rigueiro | | P | 23 | 5/20/1977 | 6-6 | 200 | R | R | A+ | | Southern Nazarene University (Okla.) |
| | 18 | 541 | Luke Anderson | | P | 22 | 4/9/1978 | 6-5 | 210 | R | R | AAA | | UNLV |
| | 19 | 571 | Daniel Padgett | | P | 22 | 1/7/1978 | 6-0 | 170 | L | L | A+ | | Northwestern University |
| | 20 | 601 | Jeff Clark | | P | 20 | 5/6/1980 | 6-6 | 240 | R | R | AA | | University of Connecticut |
| | 21 | 631** | Steve Gendron | | SS | 18 | 11/25/1981 | 6-3 | 199 | R | R | AAA | | Berkeley Prep High School (Tampa,FL) |
| | 22 | 661 | Jason Ellison | | OF | 22 | 4/4/1978 | 5-10 | 180 | R | R | MLB | 2003-2007 | Lewis-Clark State College |
| | 23 | 691 | Robert King | | P | 19 | 2/25/1981 | 6-2 | 210 | R | R | Rookie | | Modesto Junior College |
| | 24 | 721 | Ralph Ralph | | P | | | | 0 | | | - | | Modesto Junior College |
| | 25 | 751 | Dan Trumble | | IF | 20 | 9/29/1979 | 6-2 | 205 | R | R | AA | | University of San Francisco |
| | 26 | 781 | Matt Larson | | | 19 | 4/9/1981 | 6-4 | 215 | R | R | A | | Golden West College |
| | 27 | 811** | Jino Gonzalez | | P | 17 | 9/5/1982 | 6-2 | 210 | L | L | A+ | | Cimarron Memorial High School (Las Vegas,NV) |
| | 28 | 841** | Alex Hinshaw | | P | 17 | 10/31/1982 | 6-3 | 170 | L | L | AA | | Claremont High School (Claremont,CA) |
| | 29 | 871 | Dennis Hernandez | | P | | | | 0 | | | - | | |
| | 30 | 901 | Jason Pekar | | CF | 21 | 1/1/1979 | 6-2 | 225 | R | R | A- | | University of Houston |
| | 31 | 931 | Brian Burres | | P | 19 | 4/8/1981 | 6-1 | 165 | L | L | MLB | 2006-2007 | Mount Hood Community College |
| | 32 | 961 | Todd Uzzell | | P | 22 | 6/22/1978 | 6-3 | 205 | R | R | AA | | New Mexico State University |
| | 33 | 991 | Trey Lunsford | | C | 21 | 5/25/1979 | 6-1 | 195 | R | R | MLB | 2002-2003 | Texas Tech University |
| | 34 | 1021** | Jonathan Albaladejo | | P | 17 | 10/30/1982 | 6-5 | 210 | R | R | MLB | 2007-2007 | Colegio Janil High School (Vega Alta,PR) |
| | 35 | 1051 | Matthew Keating | | 1B | 22 | 8/14/1977 | 6-2 | 200 | L | R | A+ | | Northeastern University |
| | 36 | 1081 | Matthew Gibson | | 1B | | | | 0 | | | - | | Sarasota High School (Sarasota,FL) |
| | 37 | 1111 | Jeremy Schmidt | | P | 20 | 11/15/1979 | 6-2 | 190 | R | R | AA | | Manatee Community College |
| | 38 | 1141 | Elgin Graham | | P | 22 | 2/15/1978 | 6-2 | 185 | R | R | A | | Bethune-Cookman College |
| | 39 | 1171** | Greg Stone | | IF | 19 | 2/19/1981 | 6-0 | 180 | R | R | A+ | | Connors State College |
| | 40 | 1200 | Mark Walker | | OF | 21 | 8/17/1978 | 6-1 | 195 | R | R | AA | | University of Miami (Florida) |
| | 41 | 1229** | Mike Cox | | P | 21 | 11/3/1978 | 5-11 | 195 | L | L | A+ | | St. Petersburg College |
| | 42 | 1258 | Bryan Carter | | OF | 22 | 2/25/1978 | 6-0 | 194 | L | L | AA | - | Embry-Riddle University (Fla.) |
| | 43 | 1286** | Craig Molldrem | | | 18 | 9/17/1981 | 6-6 | 205 | R | R | AAA | | Boscobel High School (Boscobel,WI) |
| | 44 | 1313 | Jason Daily | | P | | | | 0 | | | - | | San Luis Obispo High School (San Luis Obispo,CA) |
| | 45 | 1339 | Calvin Fugett | | 3B | | | | 0 | | | College | | Montbello High School (Aurora,CO) |
| | 46 | 1363** | Austin Allen | | SS | 18 | 10/19/1981 | 5-9 | 175 | R | R | - | | Beaverton High School (Beaverton,OR) |
| | 47 | 1386 | Bryan Gann | | 2B | 22 | 4/7/1978 | 5-10 | 175 | R | R | A | | Oral Roberts University |
| | 48 | 1406 | Lou Colletti | | SS | | | | 0 | | | - | | Timothy Christian High School (Elmhurst,IL) |
| | 49 | 1426** | Nick Conte | | C | 18 | 1/25/1982 | 5-10 | 175 | R | R | A | | Serra High School (San Mateo,CA) |
| | 50 | 1446 | Bennett Elder | | C | | | | 0 | | | - | | Lakeside High School (Atlanta,GA) |
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