| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Rice | Owls | 17 | 7 | .708 | -- | 41-19 | 336 | 199 | Wayne Graham | Reckling Park | Jeremy Rathjen (4) | Matthew Reckling (2) | CWS Regionals,#18 in nation |
| 2 | Central Florida | Knights | 16 | 8 | .667 | 1.0 | 45-17 | 409 | 279 | Terry Rooney | Jay Bergman Field | D.J. Hicks (1) | Joe Rogers (3) | CWS Regionals |
| 3 | Tulane | Green Wave | 14 | 10 | .583 | 3.0 | 38-20 | 353 | 233 | Rick Jones | Greer Field at Turchin St | Nick Schneeberger (6) | D.J. Ponder (10) | |
| 4 | Southern Miss | Golden Eagles | 14 | 10 | .583 | 3.0 | 32-24 | 306 | 244 | Scott Berry | Pete Taylor Park | Ashley Graeter (17) | Andrew Pierce (1) | |
| 5 | Memphis | Tigers | 14 | 10 | .583 | 3.0 | 31-28 | 345 | 272 | Daron Schoenrock | FedEx Park | Eli Hynes (3) | Dan Langfield (6) | Conference Finalists |
| 6 | East Carolina | Pirates | 13 | 10 | .565 | 3.5 | 36-24-1 | 342 | 265 | Billy Godwin | Clark-LeClair Stadium | John Wooten (13) | Kevin Brandt (4) | CWS Regionals |
| 7 | Alabama-Birmingham ** | Blazers | 9 | 15 | .375 | 8.0 | 32-30 | 299 | 327 | Brian Shoop | Jerry D. Young Memorial F | Patrick Palmeiro (21) | Michael Busby (8) | Conference Champions,CWS Regionals |
| 8 | Houston | Cougars | 5 | 18 | .217 | 11.5 | 18-35-1 | 226 | 355 | Todd Whitting | Cougar Field | Landon Appling (41) | Austin Pruitt (29) | |
| 9 | Marshall | Thundering Herd | 5 | 19 | .208 | 12.0 | 17-37 | 261 | 305 | Jeff Waggoner | Appalachian Power Park | Isaac Ballou (16) | Aaron Blair (20) |