| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Florida Gulf Coast | Eagles | 25 | 5 | .833 | -- | 38-20 | 471 | 345 | Dave Tollett | Swanson Stadium | Mikel Alvarez (7) | Chris Sale (1) | |
| 2 | Mercer ** | Bears | 16 | 11 | .593 | 7.5 | 38-24 | 521 | 392 | Craig Gibson | Claude Smith Field | Jacob Tanis (1) | J.T. Odom (6) | Conference Champions,CWS Regionals |
| 3 | East Tennessee State | Buccaneers | 15 | 12 | .556 | 8.5 | 32-28 | 503 | 466 | Tony Skole | Howard Johnson Field | Paul Hoilman (2) | Bo Burton (2) | |
| 4 | North Florida | Ospreys | 14 | 12 | .538 | 9.0 | 30-28 | 449 | 435 | Dusty Rhodes | Harmon Stadium | Preston Hale (6) | Michael Kelly (9) | |
| 5 | Jacksonville | Dolphins | 14 | 12 | .538 | 9.0 | 27-29 | 411 | 419 | Terry Alexander | John Sessions Stadium | Dan Gulbransen (15) | Matt Tomshaw (11) | Conference Finalists |
| 6 | Stetson | Hatters | 14 | 13 | .519 | 9.5 | 27-31 | 382 | 425 | Peter Dunn | Melching Field | Jeff Simpson (18) | Lindsey Caughel (4) | |
| 7 | Belmont | Bruins | 13 | 13 | .500 | 10.0 | 27-27 | 415 | 450 | Dave Jarvis | Herschel Greer Stadium | Packy Elkins (10) | Jon Ivie (5) | |
| 8 | Kennesaw State | Owls | 12 | 15 | .444 | 11.5 | 24-32 | 344 | 424 | Mike Sansing | Stillwell Stadium | Ross Tendler (56) | J.B. Johnson (14) | |
| 9 | Lipscomb | Bisons | 9 | 17 | .346 | 14.0 | 19-36 | 396 | 471 | Jeff Forehand | Dugan Field | Tyler Wilson (34) | Josh Smith (3) | |
| 10 | USC-Upstate | Spartans | 8 | 19 | .296 | 15.5 | 19-37 | 286 | 488 | Matt Fincher | Cleveland S. Harley Park | Jimmy Tanner (36) | Matt Branham (10) | |
| 11 | Campbell | Fighting Camels | 8 | 19 | .296 | 15.5 | 28-27 | 482 | 363 | Greg Goff | Taylor Field | Chris Bangi (4) | Logan Davis (15) |