| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Manhattan College | Jaspers | 18 | 6 | .750 | -- | 35-18 | 480 | 336 | Kevin Leighton | Van Cortlandt Park | Mike McCann (2) | Mike Gazzola (5) | |
| 2 | Canisius College | Golden Griffins | 16 | 8 | .667 | 2.0 | 36-22 | 464 | 381 | Mike McRae | Demske Sports Complex | Kevin Mahoney (1) | Shane Davis (2) | Conference Finalists |
| 3 | Marist College ** | Red Foxes | 15 | 9 | .625 | 3.0 | 31-28 | 362 | 338 | Dennis Healy | McCann Baseball Field | Rick Pacione (8) | B.J. Martin (3) | Conference Champions,CWS Regionals |
| 4 | Rider | Broncs | 14 | 10 | .583 | 4.0 | 26-23 | 342 | 337 | Barry Davis | Sonny Pittaro Field | Sean Olson (12) | Mike Thomas (7) | |
| 5 | Niagara | Purple Eagles | 14 | 10 | .583 | 4.0 | 20-35 | 303 | 416 | Rob McCoy | Sal Maglie Stadium | Matt Wietlispach (23) | Michael Kellar (11) | |
| 6 | Fairfield | Stags | 10 | 14 | .417 | 8.0 | 20-27 | 271 | 314 | John Slosar | Alumni Diamond | Tucker Nathans (19) | Rob Gariano (1) | |
| 7 | Siena College | Saints | 9 | 15 | .375 | 9.0 | 15-35 | 298 | 441 | Tony Rossi | Siena Field | Anthony Giansanti (7) | Dan Lazzaroni (13) | |
| 8 | Saint Peter's College | Peacofks | 7 | 17 | .292 | 11.0 | 17-37 | 300 | 438 | Derek England | Jaroschak Field | Justyn Carter (14) | Ethan Jackson (10) | |
| 9 | Iona College | Gaels | 5 | 19 | .208 | 13.0 | 6-40 | 195 | 496 | Pat Carey | Salesian Field | Dean Dignelli (41) | Brian Callahan (28) |