| Northern | ||||||||||||||
| Rk | Team | Affiliate | W | L | Pct | Gbl | RF | RA | Manager | Stadium | Attendance | Top Batter | Top Pitcher | Playoffs |
| 1 | Potomac Nationals ** | WAN | 79 | 61 | .564 | -- | 720 | 600 | Randy Knorr | G. Richard Pfitzner Stadi | 177,760 | Michael Martinez (27) | Ross Detwiler (23) | League Champions |
| 2 | Wilmington Blue Rocks | KC | 69 | 71 | .493 | 10.0 | 591 | 590 | Darryl Kennedy | Daniel S. Frawley Stadium | 312,375 | Paulo Orlando (7) | Matt Kniginyzky (8) | Lost in Semi-Finals |
| 3 | Frederick Keys | BAL | 63 | 76 | .453 | 15.5 | 627 | 676 | Richie Hebner | Harry Grove Stadium | 295,656 | Brandon Snyder (13) | Brandon Erbe (1) | |
| 4 | Lynchburg Hillcats | PIT | 58 | 80 | .420 | 20.0 | 668 | 787 | Jeff Branson | Calvin Falwell Field | 162,131 | Jim Negrych (6) | Tony Watson (4) | |
| Southern | ||||||||||||||
| Rk | Team | Affiliate | W | L | Pct | Gbl | RF | RA | Manager | Stadium | Attendance | Top Batter | Top Pitcher | Playoffs |
| 1 | Myrtle Beach Pelicans | ATL | 89 | 51 | .636 | -- | 764 | 596 | Rocket Wheeler | BB&T Coastal Field | 242,397 | Ernesto Mejia (1) | Ryne Reynoso (13) | Lost in Finals |
| 2 | Kinston Indians | CLE | 72 | 66 | .522 | 16.0 | 698 | 677 | Chris Tremie | Grainger Stadium | 130,406 | Beau Mills (2) | Hector Rondon (2) | |
| 3 | Winston-Salem Warthogs | CHW | 71 | 68 | .511 | 17.5 | 625 | 679 | Tim Blackwell | Ernie Shore Field | 169,963 | John Shelby (5) | John Ely (3) | Lost in Semi-Finals |
| 4 | Salem Avalanche | HOU | 56 | 84 | .400 | 33.0 | 640 | 725 | Jim Pankovits | Lewis-Gale Field at Salem | 235,823 | Mark Ori (3) | Douglas Arguello (5) | |