| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | St. John's | Red Storm | 20 | 7 | .741 | -- | 42-16 | 394 | 254 | Edward Blankmeyer | Jack Kaiser Stadium | Brian Kemp (21) | George Brown (3) | CWS Regionals |
| 2 | Cincinnati | Bearcats | 19 | 8 | .704 | 1.0 | 39-20 | 432 | 308 | Brian Cleary | Marge Schott Stadium | Josh Harrison (5) | Dan Osterbrock (1) | Conf Finalists |
| 3 | Notre Dame | Fighting Irish | 16 | 10 | .615 | 3.5 | 33-21 | 375 | 275 | Dave Schrage | Frank Eck Stadium | A.J. Pollock (18) | David Phelps (12) | |
| 4 | Louisville ** | Cardinals | 16 | 11 | .593 | 4.0 | 41-21 | 449 | 327 | Dan McConnell | Jim Patterson Stadium | Chris Dominguez (1) | Justin Marks (4) | Conf Champions, CWS Regionals |
| 5 | Seton Hall | Pirates | 15 | 12 | .556 | 5.0 | 31-25 | 319 | 249 | Rob Sheppard | Owen T. Carroll Field | Matt Smedberg (26) | Corey Young (8) | |
| 6 | South Florida | Bulls | 14 | 13 | .519 | 6.0 | 31-27 | 370 | 360 | Lelo Prado | Red McEwan Field | Addison Maruszak (9) | Shawn Sanford (26) | |
| 7 | West Virginia | Mountaineers | 13 | 14 | .481 | 7.0 | 35-21 | 477 | 329 | Greg Van Zant | Hawley Field | Tyler Kuhn (2) | Josh Whitlock (5) | |
| 8 | Villanova | Wildcats | 12 | 15 | .444 | 8.0 | 30-28 | 363 | 399 | Joe Godri | Villanova Ballpark at Ply | Derek Shunk (10) | Brian Streilein (24) | |
| 9 | Connecticut | Huskies | 11 | 16 | .407 | 9.0 | 27-28 | 363 | 365 | Jim Penders | J.O. Christian Field | Brad Olt (3) | David Erickson (15) | |
| 10 | Rutgers | Scarlet Knights | 11 | 16 | .407 | 9.0 | 23-29 | 322 | 325 | Fred Hill | Bainton Field | Jarred Jimenez (43) | Matt Giannini (25) | |
| 11 | Pittsburgh | Panthers | 7 | 19 | .269 | 12.5 | 19-34 | 360 | 347 | Joe Jordano | Trees Field | Sean Conley (30) | Nate Reed (11) | |
| 12 | Georgetown | Hoyas | 7 | 20 | .259 | 13.0 | 18-32 | 295 | 363 | Pete Wilk | Shirley Povich Field | Sean Lamont (33) | Daniel Kennedy (31) |