| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Western Carolina | Catamounts | 20 | 7 | .741 | -- | 42-20 | 520 | 346 | Todd Raleigh | Hennon Stadium | Kenny Smith (2) | Drew Saberhagen (7) | CWS Regionals |
| 2 | College of Charleston | Cougars | 20 | 7 | .741 | -- | 39-19 | 552 | 385 | John Pawlowski | Patriots Point | Chris Campbell (4) | Nick Chigges (2) | |
| 3 | Elon | Phoenix | 15 | 12 | .556 | 5.0 | 32-29 | 444 | 401 | Mike Kennedy | Latham Park | Pat Irvine (15) | Steven Hensley (8) | |
| 4 | Appalachian State | Mountaineers | 14 | 13 | .519 | 6.0 | 33-26 | 483 | 412 | Chris Pollard | Red Lackey Field | David Rubinstein (8) | Garrett Sherrill (17) | |
| 5 | UNC-Greensboro | Spartans | 14 | 13 | .519 | 6.0 | 30-30 | 372 | 378 | Mike Gaski | UNCG Baseball Stadium | Tim Carrier (24) | Ryan Falcon (1) | |
| 6 | Georgia Southern | Eagles | 13 | 14 | .481 | 7.0 | 34-28 | 438 | 386 | Rodney Hennon | J.I. Clements Stadium | Matt Miller (16) | A.J. Battisto (4) | |
| 7 | The Citadel | Bulldogs | 12 | 15 | .444 | 8.0 | 34-27 | 418 | 387 | Fred Jordan | Joseph P. Riley, Jr. Park | Zachary Brown (6) | Link Saunders (6) | Conf Finalists |
| 8 | Furman | Paladins | 11 | 16 | .407 | 9.0 | 19-36 | 276 | 375 | Ronald Smith | Furman Baseball Stadium | Bobby Hubbard (44) | Matt Klinker (16) | |
| 9 | Wofford College ** | Terriers | 8 | 19 | .296 | 12.0 | 30-33 | 448 | 521 | Steve Traylor | Russell C. King Field | Brandon Waring (1) | Ben Austin (3) | Conf Champions, CWS Regionals |
| 10 | Davidson College | Wildcats | 8 | 19 | .296 | 12.0 | 19-34 | 361 | 509 | Richard Cooke | Wilson Field | Rob Wilson (40) | Matt Webb (5) |