| Eastern | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Kent State ** | Golden Flashes | 19 | 8 | .704 | -- | 33-26 | 337 | 285 | Scott Stricklin | Olga Mural Field at Schoo | Anthony Gallas (3) | Jason Seelman (11) | Conf Champions, CWS Regionals |
| 2 | Miami | RedHawks | 16 | 9 | .640 | 2.0 | 32-24 | 333 | 259 | Dan Simonds | McKie Field at Hayden Par | Brandon Hillier (10) | John Ely (2) | |
| 3 | University at Buffalo | Bulls | 11 | 16 | .407 | 8.0 | 16-35 | 254 | 340 | Ron Torgalski | Amherst Audubon Field | Mike Folli (23) | Steve Geltz (24) | |
| 4 | Akron | Zips | 8 | 16 | .333 | 9.5 | 23-24 | 291 | 327 | Pat Bangston | Lee R. Jackson Field | Kurt Davidson (14) | Billy McKinney (19) | |
| 5 | Ohio | Bobcats | 8 | 19 | .296 | 11.0 | 23-31 | 368 | 386 | Joe Carbone | Bob Wren Stadium | Matt Stiffler (5) | Daniel Weiss (31) | |
| 6 | Bowling Green State | Falcons | 7 | 20 | .259 | 12.0 | 22-32 | 305 | 340 | Dan Schmitz | Warren E. Steller Field | Derek Spencer (18) | Tyler Johnson (4) | |
| Western | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Eastern Michigan | Eagles | 21 | 4 | .840 | -- | 32-24 | 295 | 271 | Roger Coryell | Oestrike Stadium | Steve Bradshaw (33) | Jeff Fischer (5) | Conf Finalists |
| 2 | Central Michigan | Chippewas | 21 | 6 | .778 | 1.0 | 35-21 | 432 | 271 | Steve Jaksa | Theunissen Stadium | Ben Humphrey (1) | Josh Collmenter (1) | |
| 3 | Northern Illinois | Huskies | 16 | 11 | .593 | 6.0 | 34-24 | 378 | 334 | Ed Mathey | Ralph McKinzie Field | Jesse Seykora (7) | Matt German (3) | |
| 4 | Toledo | Rockets | 14 | 13 | .519 | 8.0 | 26-28 | 349 | 392 | Cory Mee | Scott Park Baseball Compl | Drew Hoisington (4) | Kyle Rawlings (39) | |
| 5 | Western Michigan | Broncos | 8 | 16 | .333 | 12.5 | 16-33 | 240 | 310 | Randy Ford | Hyames Field | Zach Gentile (28) | Ethan Hollingsworth (15) | |
| 6 | Ball State | Cardinals | 8 | 19 | .296 | 14.0 | 20-34 | 272 | 380 | Greg Beals | Ball Diamond | Matt Stoeklen (15) | Kyle Heyne (10) | |