| Northern | ||||||||||||||
| Rk | Team | Affiliate | W | L | Pct | Gbl | RF | RA | Manager | Stadium | Attendance | Top Batter | Top Pitcher | Playoffs |
| 1 | Wilmington Blue Rocks | KC | 75 | 62 | .547 | -- | 602 | 517 | Darryl Kennedy | Daniel S. Frawley Stadium | 301,654 | Jose Duarte (8) | Rowdy Hardy (4) | Lost in Semi-Finals |
| 2 | Potomac Nationals | WAN | 69 | 68 | .504 | 6.0 | 682 | 649 | Randy Knorr | G. Richard Pfitzner Stadi | 161,581 | Ian Desmond (5) | Shairon Martis (8) | |
| 3 | Frederick Keys ** | BAL | 64 | 74 | .464 | 11.5 | 582 | 736 | Tommy Thompson | Harry Grove Stadium | 264,347 | Ryan Finan (15) | Chorye Spoone (2) | League Champions |
| 4 | Lynchburg Hillcats | PIT | 55 | 82 | .401 | 20.0 | 626 | 750 | Jeff Branson | Calvin Falwell Field | 154,977 | Brad Corley (3) | Todd Redmond (9) | |
| Southern | ||||||||||||||
| Rk | Team | Affiliate | W | L | Pct | Gbl | RF | RA | Manager | Stadium | Attendance | Top Batter | Top Pitcher | Playoffs |
| 1 | Kinston Indians | CLE | 87 | 52 | .626 | -- | 782 | 569 | Mike Sarbaugh | Grainger Stadium | 99,827 | Josh Rodriguez (2) | Frank Herrmann (6) | Lost in Semi-Finals |
| 2 | Salem Avalanche | HOU | 79 | 60 | .568 | 8.0 | 716 | 584 | Jim Pankovits | Lewis-Gale Field at Salem | 246,285 | Mitch Einertson (4) | Chris Salamida (17) | Lost in Finals |
| 3 | Winston-Salem Warthogs | CHW | 64 | 74 | .464 | 22.5 | 607 | 647 | Tim Blackwell | Ernie Shore Field | 130,227 | Micah Schnurstein (1) | Derek Rodriguez (1) | |
| 4 | Myrtle Beach Pelicans | ATL | 59 | 80 | .424 | 28.0 | 583 | 728 | Rocket Wheeler | BB&T Coastal Field | 208,812 | Jordan Schafer (6) | Jairo Cuevas (14) | |