| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Rice ** | Owls | 22 | 2 | .917 | -- | 57-13 | 523 | 260 | Wayne Graham | Reckling Park | Brian Friday (1) | Eddie Degerman (2) | Conf Champions, CWS Final-8, #4 in Nation |
| 2 | Houston | Cougars | 18 | 6 | .750 | 4.0 | 39-22 | 367 | 251 | Rayner Noble | Cougar Field | Matt Weston (18) | Brad Lincoln (1) | Conf Finalists, CWS Regionals, #24 in Nation |
| 3 | Tulane | Green Wave | 15 | 9 | .625 | 7.0 | 43-21 | 418 | 322 | Rick Jones | Greer Field at Turchin St | Nathan Southard (4) | Sean Morgan (4) | CWS Regionals |
| 4 | Memphis | Tigers | 13 | 11 | .542 | 9.0 | 31-28 | 453 | 413 | Daron Schoenrock | Nat Buring Stadium | K.K. Chalmers (14) | Scott McGregor (22) | - |
| 5 | Southern Miss | Golden Eagles | 13 | 11 | .542 | 9.0 | 39-22 | 492 | 328 | Corky Palmer | Pete Taylor Park | Toddric Johnson (6) | Daniel Best (9) | CWS Regionals |
| 6 | East Carolina | Pirates | 10 | 14 | .417 | 12.0 | 33-26 | 381 | 296 | Billy Godwin | Clark-LeClair Stadium | Jake Smith (12) | Brody Taylor (6) | - |
| 7 | Marshall | Thundering Herd | 6 | 18 | .250 | 16.0 | 22-32 | 374 | 419 | Dave Piepenbrink | Appalachian Power Park | Brendan Murphy (13) | Chris Koutsavlis (16) | - |
| 8 | Alabama-Birmingham | Blazers | 6 | 18 | .250 | 16.0 | 19-38 | 315 | 415 | Larry Giangrosso | Jerry D. Young Memorial F | Steven Turner (31) | Jimbo Crew (29) | - |
| 9 | Central Florida | Golden Knights | 5 | 19 | .208 | 17.0 | 23-33 | 293 | 301 | Jay Bergman | Jay Bergman Field | David DiNatale (30) | Tim Bascom (5) | - |