| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Jacksonville | Dolphins | 23 | 7 | .767 | -- | 43-19 | 450 | 328 | Terry Alexander | John Sessions Stadium | Daniel Murphy (4) | D.J. Ackley (4) | CWS Regionals |
| 2 | North Florida | Ospreys | 20 | 10 | .667 | 3.0 | 34-21 | 348 | 274 | Dusty Rhodes | Harmon Stadium | Matthew Oxendine (32) | Jeremy Papelbon (2) | - |
| 3 | Mercer | Bears | 19 | 11 | .633 | 4.0 | 34-26 | 362 | 356 | Craig Gibson | Claude Smith Field | Josh Thompson (7) | Andrew Urena (8) | - |
| 4 | Stetson ** | Hatters | 16 | 14 | .533 | 7.0 | 38-24 | 382 | 296 | Peter Dunn | Melching Field | Braedyn Pruitt (1) | Robbie Elsemiller (6) | Conf Champions, CWS Regionals |
| 5 | East Tennessee State | Buccaneers | 14 | 16 | .467 | 9.0 | 31-27 | 403 | 430 | Tony Skole | Howard Johnson Field | Shane Byrne (9) | Jeremy Hall (13) | Conf Finalists |
| 6 | Florida Atlantic | Owls | 14 | 16 | .467 | 9.0 | 30-28 | 336 | 330 | Kevin Cooney | FAU Baseball Stadium | Jordan Hafer (22) | Mickey Storey (1) | - |
| 7 | Campbell | Camels | 13 | 17 | .433 | 10.0 | 19-38 | 352 | 409 | Chip Smith | Taylor Field | Mike Priest (2) | Blake Herring (22) | - |
| 8 | Gardner-Webb | Bulldogs | 12 | 18 | .400 | 11.0 | 24-31 | 298 | 386 | Rusty Stroupe | Varsity Field | Blake Lalli (10) | Webster Beal (30) | - |
| 10 | Kennesaw State | Owls | 12 | 18 | .400 | 11.0 | 24-32 | 313 | 349 | Mike Sansing | Stillwell Stadium | Martin Baker (23) | Dan Dale (15) | - |
| 11 | Belmont | Bruins | 11 | 19 | .367 | 12.0 | 24-31 | 314 | 381 | Dave Jarvis | Herschel Greer Stadium | Will Tucker (6) | Charles Lee (12) | - |
| 12 | Lipscomb | Bisons | 11 | 19 | .367 | 12.0 | 22-32 | 302 | 0 | Wynn Fletcher | Dugan Field | Zack Miller (29) | - |