| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | College of Charleston | Cougars | 25 | 5 | .833 | -- | 47-16 | 535 | 339 | John Pawlowski | Patriots Point | Brett Gardner (2) | Reid Price (7) | CWS Regionals |
| 2 | The Citadel ** | Bulldogs | 21 | 9 | .700 | 4.0 | 39-28 | 435 | 346 | Fred Jordan | Joseph P. Riley, Jr. Park | Chip Cannon (1) | Jonathan Ellis (1) | Conf. Champs, CWS Regionals |
| 3 | Georgia Southern | Eagles | 21 | 9 | .700 | 4.0 | 34-25 | 518 | 341 | Rodney Hennon | J.I. Clements Stadium | Greg Dowling (12) | John Carroll (2) | - |
| 4 | Elon | Phoenix | 17 | 13 | .567 | 8.0 | 31-28 | 423 | 368 | Mike Kennedy | Latham Park | Gary Morris (8) | Matt Garner (14) | - |
| 5 | UNC-Greensboro | Spartans | 16 | 14 | .533 | 9.0 | 33-21-1 | 329 | 278 | Mike Gaski | UNCG Baseball Stadium | Ryan Gordon (17) | Ryan Falcon (4) | - |
| 6 | East Tennessee State | Buccaneers | 15 | 15 | .500 | 10.0 | 28-30 | 401 | 432 | Tony Skole | Howard Johnson Field | Caleb Moore (7) | Bo Hall (12) | - |
| 7 | Davidson College | Wildcats | 13 | 17 | .433 | 12.0 | 20-33 | 240 | 359 | Richard Cooke | Wildcat Park | Andrew Musashe (38) | Brian Akin (3) | - |
| 8 | Western Carolina | Catamounts | 12 | 18 | .400 | 13.0 | 28-31 | 396 | 395 | Todd Raleigh | Hennon Stadium | Jared Greenwood (4) | Caleb McConnell (20) | Conf. Finalists |
| 9 | Furman | Paladins | 11 | 19 | .367 | 14.0 | 21-33 | 312 | 362 | Ronald Smith | Furman Baseball Stadium | Case Cassedy (34) | Cal Hurst (24) | - |
| 10 | Wofford College | Terriers | 8 | 22 | .267 | 17.0 | 17-30 | 256 | 335 | Steve Traylor | Russell C. King Field | David Dufour (32) | Charles Vartanian (17) | - |
| 11 | Appalachian State | Mountaineers | 6 | 24 | .200 | 19.0 | 10-43 | 236 | 478 | Troy Heustess | Red Lackey Field | Justin Lee (53) | Scott Clark (26) | - |