| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Le Moyne College ** | Dolphins | 24 | 3 | .889 | -- | 36-21 | 389 | 271 | Steve Owens | Dick RockwellField | Jeff Justice (1) | Matt Scherer (1) | Conf. Champs, CWS Regionals |
| 2 | Niagara | Purple Eagles | 16 | 9 | .640 | 7.0 | 27-27 | 347 | 383 | Mike McRae | Sal Maglie Stadium | Reed Eastley (2) | Kyle Nicoletta (22) | - |
| 3 | Manhattan College | Jaspers | 16 | 9 | .640 | 7.0 | 25-27-1 | 319 | 354 | Steve Trimper | Van Cortlandt Park | Matt Cucurullo (12) | Josh Santerre (7) | Conf. Finalists |
| 4 | Marist College | Red Foxes | 17 | 10 | .630 | 7.0 | 25-30 | 301 | 294 | Joe Raccula | McCann Baseball Field | Keith Brachold (4) | Scott Chambers (6) | - |
| 5 | Rider | Broncs | 15 | 12 | .556 | 9.0 | 24-27 | 285 | 339 | Sonny Pittaro | Richard F. Daly Field | Scott Rich (3) | Eric Weiner (11) | - |
| 6 | Siena College | Saints | 13 | 12 | .520 | 10.0 | 27-26 | 282 | 281 | Tony Rossi | Siena Field | Tony Cipolla (5) | Ryan Bitter (3) | - |
| 7 | Iona College | Gaels | 11 | 14 | .440 | 12.0 | 21-31 | 272 | 357 | Al Zoccolillo | Salesian Field | Matt Callahan (15) | Sean Kramer (2) | - |
| 8 | Fairfield | Stags | 11 | 16 | .407 | 13.0 | 16-27 | 188 | 244 | John Slosar | Alumni Diamond | Nick Hudyma (30) | Tim Dugan (5) | - |
| 9 | Saint Peter's College | Peacocks | 4 | 23 | .148 | 20.0 | 8-34 | 154 | 348 | Jim Walsh | Jaroschak Field | Frank Salvano (53) | Sean Spicer (23) | - |
| 10 | Canisius College | Golden Griffins | 4 | 23 | .148 | 20.0 | 4-43 | 162 | 429 | Mark Notaro | Demske Sports Complex | Kevin Smith (46) | Matt Clingersmith (42) | - |