| Northern | ||||||||||||||
| Rk | Team | Affiliate | W | L | Pct | Gbl | RF | RA | Manager | Stadium | Attendance | Top Batter | Top Pitcher | Playoffs |
| 1 | Wilmington Blue Rocks | KC | 77 | 62 | .554 | -- | 618 | 560 | Billy Gardner | Daniel S. Frawley Stadium | 137,519 | Mike Aviles (5) | Devon Lowery (4) | Lost in Finals |
| 2 | Potomac Cannons | CIN | 67 | 72 | .482 | 10.0 | 690 | 639 | Edgar Caceres | G. Richard Pfitzner Stadi | 170,278 | Kevin Howard (3) | Edward Valdez (9) | Lost in Semi-Finals |
| 3 | Lynchburg Hillcats | PIT | 57 | 81 | .413 | 19.5 | 554 | 604 | Jay Loviglio | Calvin Falwell Field | 221,371 | Rajai Davis (2) | Nick Gravelle (6) | |
| 4 | Frederick Keys | BAL | 52 | 87 | .374 | 25.0 | 591 | 762 | Tom Lawless | Harry Grove Stadium | 320,788 | Tripper Johnson (9) | Tony Neal (22) | |
| Southern | ||||||||||||||
| Rk | Team | Affiliate | W | L | Pct | Gbl | RF | RA | Manager | Stadium | Attendance | Top Batter | Top Pitcher | Playoffs |
| 1 | Kinston Indians ** | CLE | 88 | 50 | .638 | -- | 726 | 559 | Torey Lovullo | Grainger Stadium | 266,257 | Jon Van Every (6) | J.D. Martin (3) | League Champions |
| 2 | Myrtle Beach Pelicans | ATL | 75 | 63 | .543 | 13.0 | 558 | 533 | Randy Ingle | BB&T Coastal Field | 209,095 | Wes Timmons (16) | Blaine Boyer (7) | |
| 3 | Winston-Salem Warthogs | CHW | 74 | 66 | .529 | 15.0 | 657 | 675 | Ken Dominguez, Nick Leyva | Ernie Shore Field | 107,242 | Casey Rogowski (1) | Sean Tracey (5) | Lost in Semi-Finals |
| 4 | Salem Avalanche | HOU | 65 | 74 | .468 | 23.5 | 577 | 638 | Russ Nixon | Salem Municipal Stadium | 148,067 | Mark Saccomanno (4) | Fernando Nieve (1) | |