| East | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Miss. Valley St | Devils | 22 | 6 | .786 | -- | 28-22 | 0 | 0 | -- | Conf. Finalists | |||
| 2 | Jackson State | Tigers | 18 | 12 | .600 | 5.0 | 20-20 | 33 | 85 | Mark Salter | University Park | - | ||
| 3 | Alcorn State | Braves | 14 | 18 | .437 | 10.0 | 20-28 | 255 | 312 | Willie McGowan | ASU Baseball Park | Edric Patton (7) | Corey Johnson (1) | - |
| 4 | Alabama A&M | Bulldogs | 13 | 18 | .419 | 10.5 | 15-32 | 0 | 0 | Tom Wesley | Bulldog Field | - | ||
| 5 | Alabama State | Hornets | 8 | 21 | .276 | 14.5 | 11-28 | 0 | 0 | -- | Paterson Field | - | ||
| West | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Southern ** | Jaguars | 31 | 1 | .969 | -- | 43-5 | 499 | 201 | Roger Cador | Lee-Hines Field | Rickie Weeks (1) | Dewon Day (2) | Conf. Champs, CWS Regionals |
| 2 | Texas Southern | Tigers | 19 | 13 | .594 | 12.0 | 22-30 | 0 | 0 | Candy Robinson | MacGregor Park | - | ||
| 3 | Grambling State | Tigers | 16 | 16 | .500 | 15.0 | 22-25 | 44 | 50 | Wilbert Ellis | - | |||
| 4 | Prairie View A&M | Panthers | 7 | 23 | .233 | 23.0 | 10-44 | 0 | 0 | Michael Robertson | - | |||
| 5 | Arkansas-Pine Bluff | Golden Lions | 5 | 25 | .167 | 25.0 | 12-38 | 0 | 0 | -- | Regional Park | - | ||