| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Western Carolina ** | Catamounts | 22 | 8 | .733 | -- | 43-21 | 477 | 309 | Todd Raleigh | Hennon Stadium | Alan Beck (2) | Brad Josey (3) | Conf. Champs, CWS Regionals |
| 2 | Georgia Southern | Eagles | 19 | 10 | .655 | 2.5 | 39-21 | 483 | 297 | Rodney Hennon | J.I. Clements Stadium | Brendan Gilligan (10) | Steve Cogswell (4) | Conf. Finalists |
| 3 | The Citadel | Bulldogs | 19 | 11 | .633 | 3.0 | 32-25 | 385 | 300 | Fred Jordan | Joseph P. Riley, Jr. Park | Chip Cannon (6) | Ken Egelton (26) | - |
| 4 | UNC-Greensboro | Spartans | 17 | 13 | .567 | 5.0 | 39-21 | 430 | 269 | Mike Gaski | UNCG Baseball Stadium | Ryan Gordon (3) | Jarrett Santos (2) | - |
| 5 | Furman | Paladins | 17 | 13 | .567 | 5.0 | 32-24 | 312 | 261 | Ronald Smith | Furman Baseball Stadium | Dominic Frankey (33) | Tom Mastny (1) | - |
| 6 | College of Charleston | Cougars | 17 | 13 | .567 | 5.0 | 31-27 | 419 | 361 | John Pawlowski | Patriots Point | Lee Curtis (1) | Barry Richardson (16) | - |
| 7 | Va Military Inst. | Keydets | 16 | 14 | .533 | 6.0 | 24-28 | 260 | 307 | Thomas Slater | Patchin Field | Andy Barden (32) | Phillip Hendrix (11) | - |
| 8 | Davidson College | Wildcats | 12 | 17 | .414 | 9.5 | 18-27 | 183 | 307 | Richard Cooke | Wildcat Park | Eli Benefield (53) | Derrik Wolpert (32) | - |
| 9 | East Tennessee State | Buccaneers | 9 | 20 | .310 | 12.5 | 15-36 | 264 | 404 | Tony Skole | Howard Johnson Field | Andy Howdeshell (8) | Jarrod Hyder (20) | - |
| 10 | Appalachian State | Mountaineers | 8 | 22 | .267 | 14.0 | 14-36 | 272 | 452 | Troy Heustess | Red Lackey Field | Derek Smith (31) | Nick Peterson (23) | - |
| 11 | Wofford College | Terriers | 7 | 22 | .241 | 14.5 | 9-40 | 240 | 482 | Steve Traylor | Duncan Park | Scott Holloway (45) | Jesse Cole (14) | - |