| Coast | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Pepperdine | Waves | 18 | 12 | .600 | -- | 31-32 | 391 | 418 | Frank Sanchez | Eddy D. Field Stadium | Cory Brightwell (2) | Jacob Barrack (5) | Conf. Finalists |
| 2 | Santa Clara | Broncos | 15 | 14 | .517 | 2.5 | 25-30 | 343 | 377 | -- | Buck Shaw Stadium | Joey Gomes (3) | Joe Diefenderfer (6) | - |
| 3 | St. Mary's (CA) | Gaels | 14 | 15 | .483 | 3.5 | 22-27 | 298 | 333 | John Baptista | Louis Guisto Field | Jason Waugh (4) | Mike Byer (4) | - |
| 4 | Gonzaga | Bulldogs | 14 | 16 | .467 | 4.0 | 27-29 | 388 | 339 | -- | Avista Stadium | Nate Gold (1) | Eric Dworkis (9) | - |
| West | ||||||||||||||
| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | San Diego ** | Toreros | 18 | 12 | .600 | -- | 39-23 | 488 | 348 | Rich Hill | Cunningham Stadium | David Bagley (6) | Ricky Barrett (1) | Conf. Champs, CWS Regionals |
| 2 | Portland | Pilots | 16 | 14 | .533 | 2.0 | 24-30 | 319 | 392 | Christopher Sperry | Pilot Stadium | Matt Allen (14) | Eric Hull (3) | - |
| 3 | Loyola Marymount | Lions | 15 | 15 | .500 | 3.0 | 22-34 | 371 | 476 | Frank Cruz | George C. Page Stadium | Kris Zacuto (10) | Vincent Cordova (21) | - |
| 4 | San Francisco | Dons | 9 | 21 | .300 | 9.0 | 18-38 | 343 | 497 | Nino Giarratano | Benedetti Diamond | Joe Jacobitz (7) | Peter Dunkle (14) | - |