| Rk | Team | Nickname | W | L | Pct | Gbl | Overall | RF | RA | Manager | Stadium | Top Batter | Top Pitcher | Playoffs |
| 1 | Central Florida ** | Golden Knights | 23 | 7 | .767 | -- | 41-22 | 466 | 282 | -- | Jay Bergman Field | David Mann (9) | Von Stertzbach (5) | Conf. Champions, CWS Regionals |
| 2 | Florida Atlantic | Owls | 22 | 8 | .733 | 1.0 | 46-21 | 528 | 338 | Kevin Cooney | FAU Baseball Stadium | L.J. Biernbaum (2) | Danny Core (4) | Conf. Finalists, #19 in Nation, CWS Super Regionals |
| 3 | Stetson | Hatters | 19 | 9 | .679 | 3.0 | 42-19 | 448 | 319 | Peter Dunn | Melching Field | Chris Westervelt (1) | Roger Lincoln (1) | CWS Regionals |
| 4 | Troy | Trojans | 16 | 14 | .533 | 7.0 | 28-30 | 337 | 372 | -- | Riddle-Pace Field | Wade Miller (7) | Justin Eason (12) | - |
| 5 | Jacksonville | Dolphins | 15 | 15 | .500 | 8.0 | 27-31 | 271 | 301 | Terry Alexander | John Sessions Stadium | Chad Oliva (22) | Bryan Williams (2) | - |
| 6 | Samford | Bulldogs | 13 | 17 | .433 | 10.0 | 27-31 | 335 | 331 | -- | Joe Lee Griffin Stadium | Cory Sumner (16) | Ehren Wassermann (10) | - |
| 7 | Mercer | Bears | 13 | 17 | .433 | 10.0 | 22-32 | 302 | 343 | Barry Myers | Claude Smith Field | David Harwell (11) | Brett Jarrett (3) | - |
| 10 | Jacksonville State | Gamecocks | 9 | 20 | .310 | 13.5 | 23-31 | 270 | 321 | Jim Case | Rudy Abbott Field | Evan Conley (33) | Steve Shippey (17) | - |
| 11 | Belmont | Bruins | 9 | 20 | .310 | 13.5 | 22-30 | 306 | 293 | Jason Stein | Herschel Greer Stadium | Mike Martin (29) | Alex Renes (34) | - |