| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 18 | June-Reg | Kyle Drabek | | P | 18 | 12/8/1987 | 6-1 | 190 | R | R | A | | The Woodlands High School (The Woodlands,TX) |
| 1 | 37 | June-Reg | Adrian Cardenas | | SS | 18 | 10/10/1987 | 6-0 | 185 | L | R | A+ | | Monsignor Pace High School (Miami,FL) |
| 2 | 65 | June-Reg | Andrew Carpenter | | P | 21 | 5/18/1985 | 6-3 | 230 | R | R | AA | | Long Beach State University |
| 3 | 97 | June-Reg | Jason Donald | | SS | 21 | 9/4/1984 | 6-1 | 190 | R | R | AA | | University of Arizona |
| 4 | 127 | June-Reg | D'Arby Myers | | CF | 17 | 12/9/1988 | 6-3 | 175 | R | R | A | | Westchester High School (Los Angeles,CA) |
| 5 | 157 | June-Reg | Quintin Berry | | CF | 21 | 11/21/1984 | 6-1 | 165 | L | L | A+ | | San Diego State University |
| 6 | 187 | June-Reg | Dan Brauer | | P | 22 | 10/14/1983 | 6-0 | 210 | L | L | A+ | | Northwestern University |
| 7 | 217 | June-Reg | Theodore Yarbrough | | 1B | 21 | 11/7/1984 | 6-6 | 250 | R | R | - | | Eastern Kentucky University |
| 8 | 247 | June-Reg | Terrance Warren | | OF | 17 | 8/17/1988 | 6-4 | 200 | R | R | - | | Bethel (Vallejo,CA) |
| 9 | 277 | June-Reg | Andrew Cruse | | P | 22 | 5/31/1984 | 6-1 | 193 | R | R | A+ | | University of South Carolina |
| 10 | 307 | June-Reg | Sam Walls | | P | 22 | 10/31/1983 | 5-11 | 195 | R | R | A- | | North Carolina State University |
| 11 | 337 | June-Reg | Jarrod Freeman | | P | 18 | 11/20/1987 | 6-3 | 195 | R | R | A | | Alta High School (Sandy,UT) |
| 12 | 367 | June-Reg | Darin McDonald | | CF | 18 | 11/3/1987 | 6-3 | 195 | R | R | Rookie | | Cherry Creek High School (Englewood,CO) |
| 13 | 397 | June-Reg | Zach Penprase | | SS | 21 | 2/16/1985 | 6-2 | 180 | R | R | A | | Mississippi Valley State University |
| 14 | 427 | June-Reg | Gus Milner | | CF | 22 | 4/21/1984 | 6-3 | 190 | R | R | A+ | | University of Kansas |
| 15 | 457 | June-Reg | Riley Cooper | | CF | 18 | 9/9/1987 | 6-4 | 212 | R | R | - | | Clearwater Central Catholic High School (Clearwater,FL) |
| 16 | 487 | June-Reg | Cody Montgomery | | 3B | 22 | 10/28/1983 | 6-3 | 220 | B | R | A- | | Dallas Baptist University |
| 17 | 517 | June-Reg | Jay Miller | | LF | 22 | 8/11/1983 | 5-10 | 185 | R | R | A+ | | Washington State University |
| 18 | 547 | June-Reg | Michael Dubee | | P | 20 | 1/12/1986 | 6-2 | 177 | R | R | A+ | | Okaloosa-Walton College |
| 19 | 577 | June-Reg | Robert Roth | | P | 17 | 8/5/1988 | 6-1 | 0 | R | R | Rookie | | Lewiston (Lewiston,ID) |
| 20 | 607 | June-Reg | Dominic Brown | | P | 18 | 9/3/1987 | 6-5 | 204 | L | L | A+ | | Redan High School (Stone Mountain,GA) |
| 21 | 637 | June-Reg | Jacob Dempsey | | OF | 22 | 9/24/1983 | 6-1 | 225 | L | R | A- | | Winthrop University |
| 22 | 667 | June-Reg | Ben Pfinsgraff | | P | | | | | | | A+ | | University of Maryland |
| 23 | 697 | June-Reg | Shawn Mcgill | | C | 22 | 2/29/1984 | 6-4 | 195 | R | R | A- | | Boston College |
| 24 | 727 | June-Reg | Garet Hill | | P | 22 | 5/24/1984 | 6-5 | 217 | R | R | A | | Biola University (Calif.) |
| 25 | 757 | June-Reg | Billy Mohl | | P | 22 | 6/1/1984 | 6-4 | 210 | R | R | College | | Tulane University |
| 26 | 787 | June-Reg | Will Savage | | P | | | | | | | AA | | University of Oklahoma |
| 27 | 817 | June-Reg | John Brownell | | P | 23 | 6/28/1983 | 6-3 | 175 | R | R | A- | | University of Oklahoma |
| 28 | 847 | June-Reg | Herman Demmink | | 3B | 22 | 9/21/1983 | 6-0 | 185 | | | A | | Clemson University |
| 29 | 877 | June-Reg | Mike Fuentes | | C | 22 | 12/15/1983 | 6-1 | 210 | L | R | Rookie | | Coastal Carolina University |
| 30 | 907 | June-Reg | Brian Capps | | OF | | | | | | | A- | | Texas Tech University |
| 31 | 937 | June-Reg | Bruce Billings | | P | 20 | 11/18/1985 | 6-0 | 200 | R | R | A | | San Diego State University |
| 32 | 967 | June-Reg | Alan Robbins | | C | 22 | 7/7/1983 | 6-0 | 205 | L | R | A+ | | Winthrop University |
| 33 | 997 | June-Reg | Michael Deveaux | | SS | 22 | 5/9/1984 | 6-2 | 212 | R | R | Rookie | | Georgia College & State University |
| 34 | 1027 | June-Reg | Joshua Thrailkill | | P | 18 | 12/25/1987 | 6-4 | 185 | R | R | College | | Roberson (Asheville,NC) |
| 35 | 1057 | June-Reg | Rashad Taylor | | CF | 19 | 1/26/1987 | 6-4 | 205 | R | R | - | | Skyline (Calif.) Junior College |
| 36 | 1087 | June-Reg | Kyle Gibson | | P | 18 | 10/23/1987 | 6-5 | 0 | R | R | College | | Greenfield Central (Greenfield,IN) |
| 37 | 1117 | June-Reg | Shawn Epps | | P | 20 | 3/26/1986 | 6-1 | 205 | R | R | - | | Northern Oklahoma College-Enid Campus |
| 38 | 1147 | June-Reg | Robert Haney | | SS | 17 | 8/16/1988 | 6-0 | 145 | L | R | - | | Kings Park (Kings Park,NY) |
| 39 | 1177 | June-Reg | Gerard Mohrmann | | P | 18 | 10/27/1987 | 6-4 | 180 | R | R | - | | Manitou Springs (Manitou Springs,CO) |
| 40 | 1207 | June-Reg | Nathan Solow | | P | 18 | 10/30/1987 | 6-2 | 175 | L | L | College | | La Cueva High School (Albuquerque,NM) |
| 41 | 1237 | June-Reg | Michael Antonini | | P | 20 | 8/6/1985 | 6-0 | 190 | R | L | A | | Georgia College & State University |
| 42 | 1267 | June-Reg | Daniel Faulkner | | P | 17 | 7/19/1988 | 6-5 | 185 | R | R | College | | Bishop Noll Institute (Hammond,IN) |
| 43 | 1296 | June-Reg | Yazy Arbelo | | 1B | 18 | 4/7/1988 | 6-4 | 220 | L | R | - | | John Carroll High School (Fort Pierce,FL) |
| 44 | 1325 | June-Reg | Michael Petello | | CF | 17 | 7/22/1988 | 6-1 | 185 | R | R | - | | Saguaro High School (Scottsdale,AZ) |
| 45 | 1354 | June-Reg | Patrick Murray | | 1B | 19 | 12/24/1986 | 6-2 | 230 | R | R | - | | Santa Ana College |
| 46 | 1382 | June-Reg | Trayvon Johnson | | C | 18 | 7/25/1987 | 6-0 | 185 | R | R | - | | Community Harvest Charter School High School (Los Angeles,CA) |
| 47 | 1410 | June-Reg | Tylien Manumaleuna | | 3B | 18 | 3/1/1988 | 6-1 | 235 | L | R | - | | Dixie (St. George,UT) |
| 48 | 1438 | June-Reg | Nicholas Morreale | | C | 18 | 4/8/1988 | 6-3 | 205 | R | R | - | | Vernon Hills (Vernon Hills,IL) |
| 49 | 1466 | June-Reg | Olivier Routhier-Pare | | P | 17 | 4/14/1989 | 6-3 | 185 | R | L | - | | Ahuntsic College |
| 50 | 1494 | June-Reg | Matthew Adams | | 2B | 18 | 1/25/1988 | 6-0 | 165 | R | R | College | | Kings Academy (West Palm Beach,FL) |
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