| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 2 | 65 | June-Reg | Mike Costanzo | $$ | 3b | 21 | 9/9/1983 | 6-3 | 215 | L | R | AAA | | Coastal Carolina University |
| 3 | 97 | June-Reg | Matt Maloney | $$ | LHP | 21 | 1/16/1984 | 6-4 | 220 | L | L | AAA | | University of Mississippi |
| 4 | 127 | June-Reg | Mike Durant | | 3b | 18 | 1/2/1987 | 6-5 | 230 | R | R | A | | Berkeley High School (Berkeley,CA) |
| 5 | 157 | June-Reg | Brett Harker | | rhp | 20 | 7/9/1984 | 6-3 | 185 | R | R | A+ | | College of Charleston |
| 6 | 187 | June-Reg | Justin Blaine | | lhp | 21 | 3/12/1984 | 6-4 | 188 | L | L | A | | University of San Diego |
| 7 | 217 | June-Reg | Jermaine Williams | | OF | 18 | 3/25/1987 | 6-3 | 210 | R | R | A- | | Los Angeles High School (Los Angeles,CA) |
| 8 | 247 | June-Reg | Jeremy Slayden | | OF | 22 | 7/28/1982 | 6-0 | 192 | L | R | AA | | Georgia Tech |
| 9 | 277 | June-Reg | Clay Harris | | 2b | 22 | 8/25/1982 | 6-4 | 220 | R | R | A+ | | Louisiana State University |
| 10 | 307 | June-Reg | Joshua Outman | | LHP | 20 | 9/14/1984 | 6-1 | 180 | L | L | AA | | Central Missouri State University |
| 11 | 337 | June-Reg | Tuffy Gosewisch | | c | 21 | 8/17/1983 | 5-11 | 190 | R | R | A+ | | Arizona State University |
| 12 | 367 | June-Reg | Mike Zagurski | | lhp | 22 | 1/27/1983 | 6-0 | 225 | L | L | MLB | 2007-2007 | University of Kansas |
| 13 | 397 | June-Reg | Matt Olson | | rhp | 18 | 11/27/1986 | 6-4 | 200 | R | R | Rookie | | Western Branch High School (Chesapeake,VA) |
| 14 | 427 | June-Reg | Aja Barto | | OF | 18 | 9/26/1986 | 6-5 | 220 | R | R | College | | Stratford High School (Houston,TX) |
| 15 | 457 | June-Reg | P.J. Antoniato | | SS | 21 | 7/2/1983 | 5-9 | 185 | R | R | A+ | | St. John's University |
| 16 | 487 | June-Reg | Matt Edwards | | 1b | 22 | 3/6/1983 | 6-2 | 205 | R | R | A- | | University of Notre Dame |
| 17 | 517 | June-Reg | Ronald Hill | | RHP | 22 | 11/29/1982 | 6-2 | 215 | R | R | AA | | University of North Carolina-Wilmington |
| 18 | 547 | June-Reg | Darren Byrd | | rhp | 18 | 10/24/1986 | 6-3 | 170 | R | R | A+ | | Pine Forest High School (Pensacola,FL) |
| 19 | 577** | June-Reg | David Huff | | lhp | 20 | 8/22/1984 | 6-2 | 185 | B | L | AAA | | Cypress College |
| 20 | 607 | June-Reg | Vance Worley | | rhp | 17 | 9/25/1987 | 6-2 | 220 | R | R | College | | McClatchy High School (Sacramento,CA) |
| 21 | 637 | June-Reg | Aaron Rawl | | RHP | 21 | 7/21/1983 | 6-0 | 190 | R | R | A | | University of South Carolina |
| 22 | 667 | June-Reg | Patrick Overholt | | rhp | 21 | 2/8/1984 | 6-0 | 190 | R | R | AA | | Santa Clara University |
| 23 | 697 | June-Reg | Derrick Mitchell | | ss | 18 | 1/5/1987 | 6-3 | 183 | R | R | A | | Paw Paw High School (Paw Paw,MI) |
| 24 | 727 | June-Reg | Dennis Diaz | | 2B | 22 | 2/7/1983 | 5-8 | 177 | R | R | AA | | Florida International University |
| 25 | 757 | June-Reg | Joe Frazee | | of | 22 | 6/16/1983 | 5-11 | 190 | L | R | Ind | | Loyola Marymount University |
| 26 | 787 | June-Reg | Brett Dalton | | 2B | 22 | 11/26/1982 | 5-10 | 180 | R | R | A- | | University of California-Irvine |
| 27 | 817 | June-Reg | Steven Alexander | | of | 20 | 2/11/1985 | 6-4 | 220 | R | R | - | | Sacramento City College |
| 28 | 847 | June-Reg | Clayton Stewart | | rhp | 22 | 10/15/1982 | 6-5 | 220 | R | R | A- | | University of Texas |
| 29 | 877 | June-Reg | Aaron Cheesman | | C | 23 | 9/25/1981 | 5-10 | 195 | R | R | A | | Florida State University |
| 30 | 907** | June-Reg | Charles Benoit | | lhp | 20 | 9/24/1984 | 6-2 | 225 | L | L | A+ | | Grayson County Junior College |
| 31 | 937 | June-Reg | Cooper Osteen | | 2b | 22 | 11/10/1982 | 5-10 | 170 | B | R | A | | University of Mississippi |
| 32 | 967 | June-Reg | Tim Sherlock | | OF | 18 | 11/30/1986 | 6-2 | 180 | L | L | College | | Chaparral High School (Scottsdale,AZ) |
| 33 | 997 | June-Reg | Andrez Ibarz | | rhp | 18 | 11/13/1986 | 6-4 | 220 | R | R | - | | Champagnat Catholic High School (Hialeah,FL) |
| 34 | 1027 | June-Reg | Osvaldo Torres | | 1B | 18 | 7/22/1986 | 6-1 | 215 | R | R | College | | Wabash Valley College |
| 35 | 1057 | June-Reg | Adam Greer | | c | 18 | 10/21/1986 | 5-11 | 200 | L | R | - | | North Eugene High School (Eugene,OR) |
| 36 | 1087 | June-Reg | Nick Monett | | c | 18 | 1/24/1987 | 6-1 | 180 | R | R | - | | Granite Hills High School (El Cajon,CA) |
| 37 | 1117 | June-Reg | Kyle Bredenkamp | | RHP | 18 | 11/25/1986 | 6-6 | 220 | R | R | - | | Millikan High School (Long Beach,CA) |
| 38 | 1147 | June-Reg | Micah Sales | | rhp | 17 | 7/30/1987 | 6-6 | 185 | R | R | College | | Madison County High School (Danielsville,GA) |
| 39 | 1177 | June-Reg | Bobby Kennedy | | lhp | 18 | 12/26/1986 | 6-4 | 220 | L | L | - | | Trinity Catholic High School (Ocala,FL) |
| 40 | 1206 | June-Reg | Travis Jones | | 2B | 19 | 11/10/1985 | 5-9 | 190 | R | R | A+ | | Lake City Community College |
| 41 | 1235 | June-Reg | Ryan Selden | | ss | 18 | 10/11/1986 | 6-1 | 175 | R | R | - | | Canyon Springs High School (Moreno Valley,CA) |
| 42 | 1264 | June-Reg | John Dischert | | LHP | 18 | 1/20/1987 | 6-5 | 210 | L | L | - | | St. Mark's High School (Wilmington,DE) |
| 43 | 1293 | June-Reg | Ryan Verdugo | | lhp | 18 | 4/10/1987 | 6-0 | 195 | L | L | - | | Lake Stevens High School (Lake Stevens,WA) |
| 44 | 1322 | June-Reg | Luis Alvarez | | of | 18 | 1/2/1987 | 5-11 | 155 | R | R | - | | Pedro Falu Oreliano (Rio Grande,PR) |
| 45 | 1351 | June-Reg | Mike Modica | | LHP | 18 | 12/16/1986 | 6-0 | 175 | L | L | College | | Washington Township High School (Sewell,NJ) |
| 46 | 1380 | June-Reg | Jason Stacy | | RHP | 17 | 7/6/1987 | 6-3 | 195 | R | R | - | | Westview High School (Phoenix,AZ) |
| 47 | 1409 | June-Reg | John Blanton | | ss | 23 | 6/26/1982 | 6-2 | 185 | R | R | - | | William Jewell College (Mo.) |
| 48 | 1437 | June-Reg | Ben Hornbeck | | lhp | 17 | 7/22/1987 | 6-5 | 192 | R | L | College | | Sunnyslope High School (Phoenix,AZ) |
| 49 | 1464 | June-Reg | Shane Erb | | rhp | 18 | 5/3/1987 | 6-6 | 195 | R | R | Rookie | | Father Judge High School (Philadelphia,PA) |
| 50 | 1491 | June-Reg | Tyler Gooch | | RHP | 23 | 4/12/1982 | 5-11 | 185 | R | R | Rookie | | University of Oklahoma |
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