| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 23 | June-Reg | Philip Hughes | $$ | P | 18 | 6/24/1986 | 6-5 | 220 | R | R | MLB | 2007-2008 | Foothill High School (Santa Ana,CA) |
| 1 | 37 | June-Reg | Jon Poterson | $$ | C | 18 | 2/10/1986 | 6-1 | 215 | B | R | A | | Chandler High School (Chandler,AZ) |
| 1 | 41 | June-Reg | Jeff Marquez | $$ | P | 19 | 8/10/1984 | 6-2 | 175 | R | R | AAA | | Sacramento City College |
| 2 | 42 | June-Reg | Brett Smith | $$ | P | 20 | 8/12/1983 | 6-5 | 220 | R | R | AA | | University of California-Irvine |
| 3 | 99 | June-Reg | Christian Garcia | $$ | P | 18 | 8/24/1985 | 6-4 | 175 | R | R | A | | Gulliver Prep High School (Coral Gables,FL) |
| 4 | 129 | June-Reg | Jason Jones | | P | 21 | 11/20/1982 | 6-5 | 225 | R | R | AA | | Liberty University |
| 5 | 159 | June-Reg | Jesse Hoover | | P | 22 | 1/8/1982 | 6-3 | 210 | R | R | A- | | Indiana Institute of Technology |
| 6 | 189 | June-Reg | Nate Phillips | | SS | 18 | 1/24/1986 | 6-2 | 190 | B | R | Rookie | | Grace Prep Academy High School (Arlington,TX) |
| 7 | 219 | June-Reg | Alex Garabedian | | C | 18 | 8/26/1985 | 6-2 | 210 | R | R | A | | Columbus High School (Miami,FL) |
| 8 | 249 | June-Reg | Mike Martinez | | P | 23 | 4/12/1981 | 7-2 | 190 | R | R | A+ | | California State University, Fullerton |
| 9 | 279 | June-Reg | Grant Plumley | | SS | 22 | 12/21/1981 | 6-0 | 185 | R | R | AAA | | Oral Roberts University |
| 10 | 309 | June-Reg | Ben Scheinbaum | | P | 22 | 11/2/1981 | 6-6 | 230 | L | L | A- | | UNLV |
| 11 | 339 | June-Reg | Cody Ehlers | | 1B | 22 | 4/16/1982 | 5-11 | 184 | L | L | AA | | University of Missouri |
| 12 | 369 | June-Reg | Rod Allen | | OF | 21 | 9/21/1982 | 6-2 | 200 | R | R | A+ | | Oklahoma State University |
| 13 | 399 | June-Reg | P.J. Pilittere | | C | 22 | 11/23/1981 | 6-0 | 215 | R | R | AA | | California State University, Fullerton |
| 14 | 429 | June-Reg | Ben Jones | | 1B | 22 | 7/3/1981 | 6-3 | 196 | R | R | A+ | | University of Louisiana-Monroe |
| 15 | 459 | June-Reg | Robert Villanova | | OF | 21 | 7/8/1982 | 6-2 | 185 | L | R | A | | Iona College |
| 16 | 489 | June-Reg | Ryan Haag | $$ | 2B | 22 | 11/20/1981 | 5-9 | 180 | L | R | A+ | | Fresno State University |
| 17 | 519 | June-Reg | Evan Tierce | | OF | 21 | 7/19/1982 | 5-11 | 190 | L | L | A+ | | Texas State University |
| 18 | 549 | June-Reg | Yosvany Almario-Cabrera | | 3B | 24 | 6/21/1980 | 5-11 | 190 | R | R | A+ | | Miami-Dade South Community College |
| 19 | 579 | June-Reg | Jordan Devoir | | SS | 21 | 8/13/1982 | 6-3 | 210 | R | R | A | | University of Illinois-Chicago |
| 20 | 609 | June-Reg | Jose Tadeo | | P | 22 | 4/3/1982 | 6-2 | 180 | B | R | Rookie | | Culver-Stockton College |
| 21 | 639 | June-Reg | Scott Rich | | OF | 21 | 8/18/1982 | 6-3 | 215 | R | L | A- | | Rider University |
| 22 | 669** | June-Reg | Patrick Caldwell | | P | | | | | | | - | | Yavapai College |
| 23 | 699 | June-Reg | Jamarkus James | | OF | | | | | | | - | | Grand Prairie High School (Grand Prairie,TX) |
| 24 | 729** | June-Reg | Ryan Tabor | | P | 19 | 12/13/1984 | 6-3 | 170 | L | L | College | | Community College of Southern Nevada |
| 25 | 759 | June-Reg | Garrison Campfield | | P | 20 | 5/29/1984 | 6-1 | 200 | R | R | A | | Navarro College |
| 26 | 789 | June-Reg | Sean Kramer | | P | 20 | 7/21/1983 | 6-6 | 180 | L | L | A- | | Iona College |
| 27 | 819 | June-Reg | Jeremiah Shepherd | | P | 19 | 5/18/1985 | 6-1 | 175 | R | R | College | | Texarkana College |
| 28 | 849** | June-Reg | Jake McCarter | | P | 19 | 8/31/1984 | 6-1 | 185 | R | R | College | | Navarro College |
| 29 | 879** | June-Reg | Kyle Ginley | | P | 17 | 9/1/1986 | 6-2 | 225 | R | R | A+ | | Dunnellon High School (Dunnellon,FL) |
| 30 | 909 | June-Reg | Jonathan Lindenberger | | P | | | | | | | College | | San Jacinto College-North |
| 31 | 939 | June-Reg | Grant Duff | | P | 21 | 12/19/1982 | 6-6 | 210 | R | R | A+ | | College of the Sequoias |
| 32 | 969 | June-Reg | Clint Preisendorder | | P | | | | | | | - | | La Jolla Country Day School High School (La Jolla,CA) |
| 33 | 999 | June-Reg | Michael Dunn | | 1B | 19 | 5/23/1985 | 6-1 | 185 | L | L | A+ | | Community College of Southern Nevada |
| 34 | 1029 | June-Reg | Jonathan Bertschinger | | OF | 19 | 8/29/1984 | 6-4 | 185 | L | R | - | | Navarro College |
| 35 | 1059 | June-Reg | Michael Hale | | P | | | | | | | College | | Ball State University |
| 36 | 1089 | June-Reg | Matt Harrington | | P | 22 | 2/1/1982 | 6-4 | 210 | R | R | Ind | | |
| 37 | 1119 | June-Reg | Ryan Rote | | P | 21 | 8/8/1982 | 6-4 | 225 | R | R | A+ | | Vanderbilt University |
| 38 | 1149 | June-Reg | Joseph Krebs | | P | 19 | 9/14/1984 | 6-0 | 200 | L | L | A | | Navarro College |
| 39 | 1179 | June-Reg | Tim LeMaster | | OF | | | | | | | - | | Perry Meridian High School (Indianapolis,IN) |
| 40 | 1209 | June-Reg | Nathan Griffin | | C | 22 | 12/7/1981 | 6-0 | 195 | R | R | AA | | Oral Roberts University |
| 41 | 1238 | June-Reg | Mike Lomba | | P | | | | | | | - | | Sacramento City College |
| 42 | 1267 | June-Reg | Ronald Ball | | P | | | | 0 | | | College | | Cypress College |
| 43 | 1296 | June-Reg | Keaton Hougen | | P | | | | | | | - | | Wylie High School (Wylie,TX) |
| 44 | 1325 | June-Reg | Harrison Ashmore | | P | | | | | | | - | | Mansfield High School (Arlington,TX) |
| 45 | 1354** | June-Reg | Andrew Fiorenza | | P | 20 | 6/24/1984 | 6-1 | 205 | R | R | AAA | | Middle Georgia College |
| 46 | 1383 | June-Reg | Juan Velazquez | | P | 20 | 10/11/1983 | 6-4 | 190 | R | R | A | | Grossmont College |
| 47 | 1412 | June-Reg | Justin O'Bannon | | P | 18 | 8/12/1985 | 6-3 | 185 | R | R | - | | San Jacinto College-North |
| 48 | 1440 | June-Reg | Erik Morrison | | SS | | | | | | | A- | | Arroyo Grande High School (Arroyo Grande,CA) |
| 49 | 1468 | June-Reg | Andrew Spaulding | | OF | | | | | | | - | | Purcell Marian High School (Cincinnati,OH) |
| 50 | 1496** | June-Reg | Chris Davis | | 3B | 18 | 3/17/1986 | 6-3 | 210 | L | R | AAA | | Longview High School (Longview,TX) |
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