| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 5 | June-Reg | Mark Rogers | $$ | P | 18 | 1/30/1986 | 6-2 | 205 | R | R | A+ | | Mount Ararat High School (Topsham,ME) |
| 2 | 46 | June-Reg | Yovani Gallardo | $$ | P | 18 | 2/27/1986 | 6-2 | 190 | R | R | MLB | 2007-2008 | Trimble Tech High School (Fort Worth,TX) |
| 3 | 76 | June-Reg | Josh Wahpepah | $$ | P | 19 | 7/17/1984 | 6-4 | 185 | R | R | A+ | | Cowley County Community College |
| 4 | 106 | June-Reg | Josh Baker | | P | 22 | 4/2/1982 | 6-5 | 220 | R | R | A+ | | Rice University |
| 5 | 136 | June-Reg | Angel Salome | | C | 18 | 6/8/1986 | 5-7 | 190 | R | R | A+ | | |
| 6 | 166 | June-Reg | Stephen Chapman | | OF | 18 | 10/12/1985 | 6-0 | 180 | L | L | A+ | | Marianna High School (Marianna,FL) |
| 7 | 196 | June-Reg | Craig Langille | | P | 18 | 11/12/1985 | 6-2 | 190 | R | R | Rookie | | Charles Allen High School (Bedford,NS) |
| 8 | 226 | June-Reg | Brandon Parillo | | P | 18 | 9/22/1985 | 5-10 | 185 | L | L | A | | Marina High School (Huntington Beach,CA) |
| 9 | 256 | June-Reg | Derek De Carlo | | P | 21 | 3/24/1983 | 6-3 | 170 | R | R | A | | Florida International University |
| 10 | 286 | June-Reg | Steve Sollmann | | 2B | 22 | 4/1/1982 | 5-10 | 190 | R | R | AAA | | University of Notre Dame |
| 11 | 316 | June-Reg | Lenny Leclercq | | SS | 18 | 9/7/1985 | 6-2 | 180 | R | R | Rookie | | West Vigo High School (West Terre Haute,IN) |
| 12 | 346 | June-Reg | Andrew Albers | | P | 18 | 10/6/1985 | 6-1 | 195 | L | L | College | | John Paul II High School (North Battleford,SK) |
| 13 | 376 | June-Reg | Angel Ayala | | 1B | 17 | 7/24/1986 | 6-2 | 208 | L | R | Rookie | | Lino Padron Rivera High School (Vega Baja,PR) |
| 14 | 406 | June-Reg | Grant Richardson | | 3B | 21 | 2/26/1983 | 6-1 | 210 | R | R | A | | Washington State University |
| 15 | 436 | June-Reg | David Johnson | | P | 21 | 8/25/1982 | 6-5 | 200 | R | R | AA | | UCLA |
| 16 | 466 | June-Reg | Alexandre Periard | | P | 17 | 6/15/1987 | 6-1 | 180 | L | R | A+ | | Polyvalente Deux-Montagnes High School (Deux Montagnes,QC) |
| 17 | 496 | June-Reg | Lorenzo Cain | | OF | 18 | 4/13/1986 | 6-2 | 165 | R | R | AAA | | Madison County High School (Madison,FL) |
| 18 | 526 | June-Reg | Darren Ford | | OF | 18 | 10/1/1985 | 6-1 | 195 | R | R | A+ | | Vineland High School (Vineland,NJ) |
| 19 | 556 | June-Reg | Josh Brady | | OF | 23 | 10/24/1980 | 5-10 | 187 | R | R | A+ | | Texas Tech University |
| 20 | 586 | June-Reg | Jose Garcia | | P | | | | | | | - | | Indian Hills Community College-Ottumwa |
| 21 | 616 | June-Reg | Drew Bowman | | P | 18 | 11/8/1985 | 6-4 | 190 | R | L | A | | Dakota Ridge High School (Littleton,CO) |
| 22 | 646 | June-Reg | Matt Kretzschmar | | P | 17 | 8/2/1986 | 6-3 | 215 | R | R | A | | San Pedro High School (San Pedro,CA) |
| 23 | 676 | June-Reg | Tony Festa | | 3B | 23 | 12/1/1980 | 6-2 | 200 | L | R | A+ | | University of California-Riverside |
| 24 | 706 | June-Reg | Jose Delgado | | P | | | | | | | - | | Puerto Rico Baseball Academy High School (Gurabo,PR) |
| 25 | 736 | June-Reg | Sean Morgan | | P | 18 | 1/15/1986 | 6-3 | 215 | R | R | A- | | Clements School High School (Sugar Land,TX) |
| 26 | 766 | June-Reg | Dustin Timm | | P | | | | | | | College | | University of Nebraska |
| 27 | 796 | June-Reg | Ty Prior | | P | | | | | | | - | | Olympia High School (Orlando,FL) |
| 28 | 826** | June-Reg | Ronnie Prettyman | | 3B | 22 | 8/4/1981 | 6-2 | 190 | L | R | AAA | | California State University, Fullerton |
| 29 | 856 | June-Reg | Ryan Paterson | | P | | | | | | | - | | Lake Cowichan High School (Duncan,BC) |
| 30 | 886 | June-Reg | Brian Johnson | | P | | | | | | | - | | East Islip High School (Islip Terrace,NY) |
| 31 | 916** | June-Reg | Kanekoa Texeira | | P | 18 | 2/6/1986 | 6-2 | 190 | R | R | A+ | | Kamehameha High School (Honolulu,HI) |
| 32 | 946 | June-Reg | Joel Needham | | P | 22 | 8/16/1981 | 6-3 | 220 | R | R | A+ | | University of California, Davis |
| 33 | 976 | June-Reg | Luis Bernal | | P | 21 | 1/24/1983 | 6-1 | 195 | R | R | Rookie | | Pima Community College |
| 34 | 1006 | June-Reg | Kris Dabrowiecki | | P | | | | | | | College | | Ursula Franklin Academy High School (Toronto,ON) |
| 35 | 1036** | June-Reg | Chris Copot | | C | | | | | | | - | | John Diefenbaker High School (Prince Albert,SK) |
| 36 | 1066** | June-Reg | Stephen Barnes | | P | | | | | | | - | | First Coast High School (Jacksonville,FL) |
| 37 | 1096** | June-Reg | Sean McCraw | | C | 18 | 3/11/1986 | 6-0 | 185 | L | R | A+ | | Alvin High School (Alvin,TX) |
| 38 | 1126 | June-Reg | Donald Jordat | | P | | | | | | | - | | Summit Christian High School (West Palm Beach,FL) |
| 39 | 1156** | June-Reg | Jeremy Bloor | | P | | | | | | | - | | Grand Rapids Community College |
| 40 | 1186 | June-Reg | Chris Rickey | | P | | | | | | | College | | Reno High School (Reno,NV) |
| 41 | 1216 | June-Reg | James Coker | | P | | | | | | | - | | Spartanburg Methodist College |
| 42 | 1245 | June-Reg | Josh Louis | | P | 19 | 3/9/1985 | 6-2 | 220 | R | R | A | | Temple College |
| 43 | 1274 | June-Reg | Brandon Jasper | | 3B | | | | | | | - | | Newport Harbor High School (Newport Beach,CA) |
| 44 | 1303 | June-Reg | Jon Mungle | | OF | 22 | 10/29/1981 | 6-1 | 217 | L | R | Ind | | Mississippi State University |
| 45 | 1332** | June-Reg | Deik Scram | | OF | 20 | 2/1/1984 | 6-2 | 180 | L | R | AA | | Cowley County Community College |
| 46 | 1361 | June-Reg | Louis Metzner | | P | | | | | | | - | | Langley, B.C. (Langley,BC) |
| 47 | 1390 | June-Reg | Derek Miller | | P | 22 | 11/8/1981 | 6-0 | 195 | L | L | AA | | University of Vermont |
| 48 | 1419 | June-Reg | Brandon Glover | | OF | 17 | 7/21/1986 | 6-0 | 190 | L | L | College | | Mckinney High School (Mckinney,TX) |
| 49 | 1447 | June-Reg | Shane Buriff | | P | | | | | | | - | | Sickles High School (Tampa,FL) |
| 50 | 1475 | June-Reg | Chad Miller | | 1B | | | | | | | - | | Chandler-Gilbert Community College |
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