| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 11 | June-Reg | Michael Aubrey | $$ | 1B | 21 | 4/15/1982 | 6-1 | 195 | L | L | MLB | 2008-2008 | Tulane University |
| 1 | 18 | June-Reg | Brad Snyder | $$ | OF | 21 | 5/25/1982 | 6-3 | 210 | L | L | AAA | | Ball State University |
| 1 | 31 | June-Reg | Adam Miller | $$ | P | 18 | 11/26/1984 | 6-4 | 180 | R | R | AAA | | Mckinney High School (Mckinney,TX) |
| 2 | 48 | June-Reg | Javier Herrera | $$ | C | 21 | 10/8/1981 | 6-2 | 190 | R | R | AAA | | University of Tennessee |
| 3 | 78 | June-Reg | Ryan Garko | $$ | C | 22 | 1/2/1981 | 6-1 | 220 | R | R | MLB | 2005-2008 | Stanford University |
| 4 | 108** | June-Reg | Ben Harrison | | OF | 21 | 9/18/1981 | 6-4 | 220 | R | R | AA | | University of Florida |
| 5 | 138 | June-Reg | Juan Valdes | | OF | 18 | 6/22/1985 | 6-0 | 150 | B | R | AA | | Fernando Callejo High School (Manati,PR) |
| 6 | 168 | June-Reg | Kevin Kouzmanoff | | 3B | 21 | 7/25/1981 | 6-1 | 200 | R | R | MLB | 2006-2008 | University of Nevada |
| 7 | 198 | June-Reg | Matt Davis | | P | 21 | 11/19/1981 | 6-2 | 200 | R | R | AA | | Ohio State University |
| 8 | 228 | June-Reg | Bo Ashabraner | | P | 22 | 2/19/1981 | 6-7 | 230 | R | R | A | | Long Beach State University |
| 9 | 258 | June-Reg | Anthony Lunetta | | SS | 22 | 10/9/1980 | 5-10 | 185 | R | R | AA | | USC |
| 10 | 288 | June-Reg | Scott Roehl | | P | 21 | 8/19/1981 | 6-0 | 200 | R | R | AA | | University of Arkansas |
| 11 | 318 | June-Reg | Ryan Mulhern | | OF | 22 | 11/29/1980 | 6-1 | 210 | R | R | AAA | | University of South Alabama |
| 12 | 348 | June-Reg | Brandon Pinckney | | SS | 21 | 4/12/1982 | 5-9 | 165 | R | R | AAA | | Sacramento City College |
| 13 | 378 | June-Reg | Steven Reinhold | | 2B | 18 | 3/2/1985 | 5-8 | 175 | R | R | College | | Tuscola High School (Waynesville,NC) |
| 14 | 408 | June-Reg | Denton Williams | | OF | 18 | 2/9/1985 | 6-3 | 190 | R | R | - | | A&M Consolidated High School (College Station,TX) |
| 15 | 438 | June-Reg | Ryan Spilman | | C | 18 | 8/25/1984 | 6-2 | 185 | R | R | AA | | Mount Vernon High School (Mount Vernon,IN) |
| 16 | 468 | June-Reg | Aaron Laffey | | P | 18 | 4/15/1985 | 6-1 | 178 | L | L | MLB | 2007-2008 | Alleghany High School (Cumberland,MD) |
| 17 | 498 | June-Reg | Jeff Pry | | P | 18 | 11/12/1984 | 6-4 | 205 | R | R | Rookie | | Franklin High School (Portland,OR) |
| 18 | 528 | June-Reg | Dusty Barnard | | P | 20 | 6/28/1983 | | | R | R | College | | Connors State College |
| 19 | 558 | June-Reg | Joseph Huskins | | C | 19 | 3/25/1984 | 6-3 | 185 | L | R | - | | Cypress College |
| 20 | 588 | June-Reg | Shane Mathews | | P | | | | | | | A | | St. Stephens High School (Hickory,NC) |
| 21 | 618 | June-Reg | Adam Brandenburg | | P | 21 | 8/17/1981 | 6-5 | 225 | L | L | AA | | Kennesaw State University |
| 22 | 648 | June-Reg | Matt Elliot | | P | 19 | 4/6/1984 | 6-0 | 175 | R | R | - | | Dixie Junior College |
| 23 | 678 | June-Reg | Tim Montgomery | | OF | 21 | 6/2/1982 | 6-3 | 205 | R | R | A | | University of Hawaii-Manoa |
| 24 | 708 | June-Reg | Ryan Goleski | | 1B | 21 | 3/19/1982 | 6-3 | 225 | R | R | AA | | Eastern Michigan University |
| 25 | 738** | June-Reg | Travis Debondt | | P | 19 | 10/28/1983 | 6-4 | 190 | L | L | College | | Bakersfield Junior College |
| 26 | 768** | June-Reg | Andrew Johnston | | P | 19 | 4/20/1984 | 6-5 | 205 | R | R | A+ | | Jefferson College |
| 27 | 798 | June-Reg | Michael Felix | | P | 17 | 8/13/1985 | 5-11 | 180 | L | L | A | | Rutherford High School (Panama City,FL) |
| 28 | 828** | June-Reg | Jason James | | OF | 18 | 8/30/1984 | 5-10 | 175 | L | L | Ind | | Kishwaukee Community College |
| 29 | 858 | June-Reg | Brett Parker | | SS | 22 | 8/27/1980 | 6-0 | 190 | R | R | A+ | | University of South Alabama |
| 30 | 888 | June-Reg | James Smith | | P | 20 | 10/24/1982 | 6-2 | 190 | R | R | - | | Merced College |
| 31 | 918 | June-Reg | Mark Harris | | P | 22 | 2/17/1981 | 6-2 | 200 | R | R | A- | | College of William and Mary |
| 32 | 948** | June-Reg | Steven Jackson | | P | 21 | 3/15/1982 | 6-5 | 215 | R | R | AAA | | Clemson University |
| 33 | 978 | June-Reg | Joe Reid | | P | 20 | 9/7/1982 | 6-0 | 197 | R | R | - | | St. John's University |
| 34 | 1008 | June-Reg | Roger Lincoln | | P | 22 | 7/19/1980 | 5-10 | 175 | L | L | AA | | Stetson University |
| 35 | 1038 | June-Reg | Bart Babineaux | | OF | 20 | 12/31/1982 | 6-3 | 215 | R | R | College | | El Camino College |
| 36 | 1068** | June-Reg | Jared Goedert | | 3B | 18 | 5/25/1985 | 6-1 | 180 | R | R | A+ | | Concordia High School (Concordia,KS) |
| 37 | 1098 | June-Reg | Zach Wallis | | P | 19 | 3/20/1984 | 6-2 | 180 | L | L | - | | Enid High School (Enid,OK) |
| 38 | 1128 | June-Reg | Neall French | | C | 19 | 8/5/1983 | 6-3 | 210 | R | R | College | | Grand Rapids Community College |
| 39 | 1158 | June-Reg | Jim Rapoport | | OF | 18 | 6/25/1985 | 5-11 | 160 | L | L | A+ | | Chaminade Prep High School (Chatsworth,CA) |
| 40 | 1188** | June-Reg | Adrian Schau | | P | 21 | 1/8/1982 | 6-2 | 200 | R | R | A | | Villanova University |
| 41 | 1218** | June-Reg | Robert Leonhardt | | P | 18 | 9/27/1984 | 6-5 | 185 | R | R | A | | Cypress Fairbanks High School (Cypress,TX) |
| 42 | 1247 | June-Reg | Adam Hanson | | P | 21 | 8/6/1981 | 6-2 | 195 | R | R | AAA | | Wake Forest University |
| 43 | 1276 | June-Reg | Joe Weaver | | P | 21 | 8/17/1981 | 6-4 | 195 | R | R | A- | | Oklahoma State University |
| 44 | 1304 | June-Reg | Kyle Muschara | | P | 18 | 9/8/1984 | 6-2 | 185 | R | R | College | | Lassiter High School (Marietta,GA) |
| 45 | 1331 | June-Reg | Rafeal Cotto | | OF | 17 | 11/30/1985 | 6-1 | 190 | R | R | - | | Miguel Such High School (Rio Piedras,PR) |
| 46 | 1358 | June-Reg | James O'Neill | | P | 18 | 6/19/1985 | 6-1 | 180 | L | L | - | | Milford High School (Highland,MI) |
| 47 | 1385 | June-Reg | Chad Corona | | 3B | 21 | 5/18/1982 | 6-4 | 227 | R | R | College | | San Diego State University |
| 48 | 1412 | June-Reg | Jordan Karnofsky | | OF | 17 | 10/16/1985 | 6-1 | 200 | L | R | College | | Christian Brothers High School (Sacramento,CA) |
| 49 | 1438** | June-Reg | David Horlacher | | P | 21 | 6/22/1982 | 6-4 | 175 | R | R | A | | Dixie Junior College |
| 50 | 1464 | June-Reg | Seth Button | | OF | 18 | 8/16/1984 | 6-2 | 190 | B | R | Ind | | Elk Lake High School (Meshoppen,PA) |
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