| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 3 | 85 | June-Reg | Tim Moss | $$ | 2B | 21 | 1/26/1982 | 5-11 | 180 | R | R | AA | | University of Texas |
| 4 | 115 | June-Reg | Michael Bourn | | OF | 20 | 12/27/1982 | 5-11 | 180 | L | R | MLB | 2006-2008 | University of Houston |
| 5 | 145 | June-Reg | Javon Moran | | OF | 20 | 9/30/1982 | 5-11 | 175 | R | R | AAA | | Auburn University |
| 6 | 175** | June-Reg | Jordan Parraz | | P | 18 | 10/8/1984 | 6-3 | 190 | R | R | A+ | | Green Valley High School (Henderson,NV) |
| 7 | 205 | June-Reg | Kyle Kendrick | | P | 18 | 8/26/1984 | 6-3 | 185 | R | R | MLB | 2007-2008 | Mount Vernon High School (Mount Vernon,WA) |
| 8 | 235 | June-Reg | Matt Linder | | P | 18 | 9/15/1984 | 6-4 | 190 | R | R | Rookie | | Sir Winston Churchill High School (Thunder Bay,ON) |
| 9 | 265 | June-Reg | Jason Crosland | | 3B | 20 | 8/30/1982 | 6-2 | 215 | R | R | A | | Lamar Community College |
| 10 | 295 | June-Reg | Matt Hopper | | 1B | 23 | 11/6/1979 | 6-4 | 210 | R | R | A | | University of Nebraska |
| 11 | 325** | June-Reg | Myron Leslie | | 3B | 21 | 5/2/1982 | 6-3 | 210 | B | R | AA | | University of South Florida |
| 12 | 355 | June-Reg | Kyle Parcus | | P | 21 | 10/7/1981 | 6-3 | 190 | L | L | AA | | Texas A&M University |
| 13 | 385 | June-Reg | Joe Wilson | | P | 20 | 8/2/1982 | 6-3 | 190 | L | L | A | | University of Maryland-Baltimore County |
| 14 | 415 | June-Reg | Chico Cortez | | C | 22 | 12/15/1980 | 6-1 | 215 | B | R | A | | Pomona-Pitzer Colleges |
| 15 | 445 | June-Reg | Joe Brunink | | 1B | 21 | 10/24/1981 | 6-2 | 200 | L | R | A- | | Grand Valley State University |
| 16 | 475 | June-Reg | Nathan Cabrera | | P | 20 | 1/25/1983 | 6-5 | 240 | R | R | A | | Trinidad State Junior College |
| 17 | 505 | June-Reg | Derek Griffith | | P | 20 | 10/28/1982 | 6-6 | 205 | L | L | A+ | | Birmingham-Southern College |
| 18 | 535** | June-Reg | Rob Johnson | | C | 19 | 7/22/1983 | 6-0 | 195 | R | R | MLB | 2007-2007 | Saddleback College |
| 19 | 565 | June-Reg | Joe Diefenderfer | | P | 22 | 1/7/1981 | 6-0 | 170 | L | L | A- | | Santa Clara University |
| 20 | 595 | June-Reg | Brad Ziegler | | P | 23 | 10/10/1979 | 6-4 | 200 | R | R | MLB | 2008-2008 | Southwest Missouri State University |
| 21 | 625 | June-Reg | Caleb McConnell | | P | 22 | 5/14/1981 | 6-4 | 210 | R | R | A- | | University of Louisiana-Monroe |
| 22 | 655 | June-Reg | Marc Tugwell | | 2B | 22 | 4/16/1981 | 6-0 | 190 | R | R | AAA | | Virginia Tech |
| 23 | 685 | June-Reg | Charlie Waite | | C | 22 | 4/18/1981 | 6-1 | 182 | R | R | College | | University of Mississippi |
| 24 | 715 | June-Reg | J.D. Foust | | OF | 22 | 5/7/1981 | 6-5 | 210 | R | R | A- | | University of Toledo |
| 25 | 745 | June-Reg | C.J. Woodrow | | P | 21 | 8/21/1981 | 6-3 | 200 | R | R | A+ | | University of Minnesota |
| 26 | 775 | June-Reg | Dan Hodges | | P | 22 | 3/6/1981 | 6-0 | 180 | L | L | A | | Florida State University |
| 27 | 805 | June-Reg | Brad Overton | | P | 22 | 4/27/1981 | 6-2 | 195 | R | R | A | | University of North Carolina-Wilmington |
| 28 | 835 | June-Reg | Blair Erickson | | P | 18 | 10/28/1984 | 6-1 | 205 | R | R | A+ | | Jesuit High School (Carmichael,CA) |
| 29 | 865 | June-Reg | Justin Cerrato | | P | 21 | 6/14/1982 | 6-2 | 205 | R | R | A+ | | University of North Florida |
| 30 | 895 | June-Reg | Ryan Harris | | SS | 17 | 11/25/1985 | 6-0 | 170 | B | R | - | | Eisenhower High School (Rialto,CA) |
| 31 | 925 | June-Reg | Matt Padilla | | P | 21 | 8/30/1981 | 6-3 | 230 | R | R | A- | | America River (Fla.) Community College |
| 32 | 955 | June-Reg | Jake Tompkins | | P | 23 | 3/10/1980 | 5-11 | 190 | R | R | A+ | | Louisiana State University |
| 33 | 985 | June-Reg | Justin Libey | | P | 22 | 1/14/1981 | 6-5 | 215 | R | R | A | | Manchester College |
| 34 | 1015 | June-Reg | Justin Riley | | C | 22 | 9/15/1980 | 5-11 | 205 | R | R | A- | | North Carolina State University |
| 35 | 1045 | June-Reg | Jason Pritchard | | P | 22 | 5/6/1981 | 6-9 | 225 | R | R | - | | Baylor University |
| 36 | 1075 | June-Reg | Brett Amyx | | 3B | 18 | 3/17/1985 | 6-6 | 230 | R | R | Rookie | | Coppell High School (Coppell,TX) |
| 37 | 1105 | June-Reg | Jesse Torborg | | OF | 20 | 1/27/1983 | 6-1 | 210 | R | R | Rookie | | Suffolk County Community College |
| 38 | 1135 | June-Reg | Edgar Mercado | | SS | 19 | 2/16/1984 | 6-2 | 176 | R | R | - | | Stoneman Douglas High School (Parkland,FL) |
| 39 | 1165 | June-Reg | Edward Romero | | P | 17 | 11/7/1985 | 5-11 | 180 | L | L | - | | Central Union High School (Fresno,CA) |
| 40 | 1195 | June-Reg | Andy Barb | | C | 18 | 10/6/1984 | 6-3 | 205 | R | R | A | | Juanita High School (Kirkland,WA) |
| 41 | 1225 | June-Reg | Greg Reynolds | | P | 17 | 7/3/1985 | 6-5 | 195 | R | R | - | | Terra Nova High School (Pacifica,CA) |
| 42 | 1254 | June-Reg | Matt Lambeth | | OF | 19 | 12/5/1983 | 6-3 | 205 | R | R | College | | Mesa College |
| 43 | 1283 | June-Reg | Cole Buchanan | | P | 18 | 3/15/1985 | 6-2 | 165 | L | L | - | | Santiago High School (Corona,CA) |
| 44 | 1311 | June-Reg | Cal Stanke | | P | 18 | 3/15/1985 | 6-0 | 180 | R | R | Rookie | | St. Mary Central High School (Neenah,WI) |
| 45 | 1338 | June-Reg | Jerod Estey | | OF | 18 | 11/30/1984 | 6-2 | 190 | L | L | - | | Moffat County High School (Craig,CO) |
| 46 | 1365** | June-Reg | Ryan Tabor | | P | 18 | 12/13/1984 | 6-3 | 170 | L | L | College | | Green Valley High School (Henderson,NV) |
| 47 | 1392 | June-Reg | Michael Crotta | | P | 18 | 9/24/1984 | 6-6 | 210 | R | R | - | | Martin County High School (Stuart,FL) |
| 48 | 1419 | June-Reg | Kyle Nash | | P | 18 | 8/3/1984 | 6-3 | 190 | R | R | - | | Mater Dei High School (Santa Ana,CA) |
| 49 | 1445 | June-Reg | Adam Sorgi | | SS | 18 | 12/17/1984 | 6-1 | 180 | L | R | A- | | Capistrano Valley High School (Mission Viejo,CA) |
| 50 | 1471 | June-Reg | Tad Reida | | SS | 18 | 5/26/1985 | 6-0 | 185 | R | R | College | | Western High School (Kokomo,IN) |
| |