| 1 | 20 | June-Reg | Chad Cordero | $$ | P | 21 | 3/18/1982 | 6-0 | 195 | R | R | MLB | 2003-2008 | California State University, Fullerton |
| 4 | 117 | June-Reg | Edgardo Baez | | OF | 17 | 7/12/1985 | 6-2 | 190 | R | R | A+ | | Jose S. Alegria (Jose S. Alegria,Dorado,PR) |
| 6 | 177 | June-Reg | Josh Whitesell | | 1B | 21 | 4/14/1982 | 6-3 | 220 | L | L | AAA | | Loyola Marymount University |
| 8 | 237 | June-Reg | Daryl Thompson | | P | 17 | 11/2/1985 | 6-1 | 170 | R | R | AAA | | La Plata High School (La Plata,MD) |
| 9 | 267 | June-Reg | Gabriel Sosa | | P | 17 | 9/27/1985 | 5-9 | 170 | L | L | A- | | Lino Padron Rivera High School (Vega Baja,PR) |
| 10 | 297 | June-Reg | Victor Hamisevicz | | 1B | 18 | 12/4/1984 | 6-4 | 190 | L | L | Rookie | | Gonzaga College Prep High School (Washington,DC) |
| 11 | 327 | June-Reg | Aaron Wideman | | P | 18 | 6/8/1985 | 5-11 | 200 | R | L | AA | | Streetsville High School (Mississauga,ON) |
| 12 | 357 | June-Reg | Mike St. Martine | | C | 21 | 4/17/1982 | 5-11 | 195 | L | R | A | | Monmouth College (Illinois) |
| 13 | 387 | June-Reg | Brad Ditter | | 2B | 22 | 7/22/1980 | 6-0 | 180 | L | R | AA | | New Mexico State University |
| 18 | 537 | June-Reg | Eduardo Nunez | | SS | 17 | 9/21/1985 | 6-2 | 170 | R | R | A+ | | American Military Academy (American Military Academy,San Sebastian,PR) |
| 20 | 597 | June-Reg | Terry Engles | | P | 17 | 11/12/1985 | 6-4 | 170 | R | R | A- | | St. Peters Boys High School (Staten Island,NY) |
| 21 | 627** | June-Reg | Joe Bisenius | | P | 20 | 9/18/1982 | 6-5 | 210 | R | R | MLB | 2007-2007 | Iowa Western Community College |
| 24 | 717** | June-Reg | Jonathan Hunton | | P | 20 | 11/30/1982 | 6-9 | 230 | R | R | A+ | | Hutchinson Community College |
| 26 | 777 | June-Reg | Jim Henderson | | P | 20 | 10/21/1982 | 6-4 | 190 | R | R | AAA | | Tennessee Wesleyan College |
| 27 | 807 | June-Reg | Bret Pignatiello | | C | 22 | 4/4/1981 | 6-2 | 200 | L | R | A- | | Eastern Illinois University |
| 28 | 837 | June-Reg | Oscar Bernazard | | 2B | 22 | 3/23/1981 | 5-10 | 195 | B | R | A+ | | Lindenwood (Mo.) University |
| 29 | 867 | June-Reg | James Lehman | | P | 18 | 3/14/1985 | 6-1 | 185 | R | R | A | | Notre Dame High School (Brampton,ON) |
| 30 | 897 | June-Reg | Matt Buck | | P | 18 | 1/4/1985 | 6-2 | 180 | L | L | - | | Cactus Shadows High School (Cave Creek,AZ) |
| 31 | 927 | June-Reg | Chris Hufft | | P | 17 | 9/12/1985 | 6-3 | 210 | R | R | - | | West Hills High School (Santee,CA) |
| 33 | 987** | June-Reg | Gabe Suarez | | SS | 18 | 12/14/1984 | 6-0 | 185 | R | R | A+ | | Arcadia High School (Phoenix,AZ) |
| 34 | 1017 | June-Reg | Matt Montgomery | | P | 18 | 1/8/1985 | 6-0 | 215 | R | R | - | | Watkins Mill High School (Gaithersburg,MD) |
| 36 | 1077 | June-Reg | Konrad Thieme | | P | 18 | 2/15/1985 | 6-3 | 205 | R | R | - | | Westlake High School (Westlake Village,CA) |
| 37 | 1107** | June-Reg | Brendan Murphy | | 1B | 18 | 10/7/1984 | 6-3 | 210 | R | R | College | | Grace Baptist Academy High School (Chattanooga,TN) |
| 39 | 1167 | June-Reg | Trent Kline | | C | 18 | 7/22/1984 | 5-9 | 160 | S | R | College | | West York Area High School (York,PA) |
| 40 | 1197 | June-Reg | Jacob Cook | | P | 18 | 3/15/1985 | 6-1 | 195 | R | L | Rookie | | Lee-Davis High School (Mechanicsville,VA) |
| 41 | 1227 | June-Reg | Jonathan Kalkau | | P | 18 | 10/8/1984 | 6-1 | 215 | R | R | College | | Holy Trinity High School (Hicksville,NY) |
| 42 | 1256 | June-Reg | Scott Rogowski | | P | 19 | 1/26/1984 | 6-5 | 190 | R | R | - | | White County High School (Doyle,TN) |
| 44 | 1313** | June-Reg | Mike Ambort | | C | 18 | 4/23/1985 | 6-1 | 215 | S | R | A- | | South Side High School (Rockville Centre,NY) |
| 45 | 1340 | June-Reg | Sean O'Brien | | 1B | 18 | 12/31/1984 | 6-1 | 185 | L | L | - | | Horace Greeley High School (Chappaqua,NY) |
| 47 | 1394 | June-Reg | Steven Romero | | P | 18 | 8/8/1984 | 6-5 | 200 | R | R | - | | Mount San Antonio College |
| 48 | 1421 | June-Reg | Lance Zawadski | | SS | 18 | 5/26/1985 | 5-11 | 180 | B | R | College | | St. John's High School (Shrewsbury,MA) |
| 49 | 1447 | June-Reg | Kyle Nicholson | | P | 17 | 7/31/1985 | 5-11 | 205 | R | R | College | | A&M Consolidated High School (College Station,TX) |
| 50 | 1473** | June-Reg | Michael James | | P | 22 | 6/2/1981 | 6-0 | 190 | R | R | AA | | University of Connecticut |