| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 5 | June-Reg | Chris Lubanski | $$ | OF | 18 | 3/24/1985 | 6-3 | 180 | L | L | AAA | | Kennedy-Kenrick High School (Schwenksville,PA) |
| 1 | 30 | June-Reg | Mitch Maier | $$ | C | 21 | 6/30/1982 | 6-2 | 195 | L | R | MLB | 2006-2006 | University of Toledo |
| 2 | 42 | June-Reg | Shane Costa | $$ | OF | 21 | 12/12/1981 | 6-1 | 205 | L | R | MLB | 2005-2007 | California State University, Fullerton |
| 3 | 72 | June-Reg | Brian McFall | $$ | 1B | 19 | 3/17/1984 | 6-3 | 205 | R | R | AA | | Chandler-Gilbert Community College |
| 4 | 102 | June-Reg | Miguel Vega | | 3B | 17 | 7/31/1985 | 6-3 | 205 | R | R | A+ | | Carmen B. Huyke (Arroyo,PR) |
| 5 | 132 | June-Reg | Chris Goodman | | P | 21 | 8/30/1981 | 5-11 | 170 | R | R | A | | Georgia Tech |
| 6 | 162 | June-Reg | Ryan Braun | | P | 22 | 7/29/1980 | 6-1 | 200 | R | R | MLB | 2006-2007 | UNLV |
| 7 | 192 | June-Reg | Mike Aviles | | SS | 22 | 3/13/1981 | 5-11 | 195 | R | R | MLB | 2008-2008 | Concordia College (New York) |
| 8 | 222 | June-Reg | Brandon Powell | | 2B | 22 | 8/15/1980 | 6-0 | 185 | L | R | AA | | Coastal Carolina University |
| 9 | 252 | June-Reg | John Gragg | | P | 22 | 5/9/1981 | 5-10 | 185 | L | L | AA | | Bethune-Cookman College |
| 10 | 282 | June-Reg | Luis Cota | | P | 17 | 8/19/1985 | 6-1 | 180 | R | R | A+ | | Sunnyside High School (Tucson,AZ) |
| 11 | 312 | June-Reg | Dusty Hughes | | P | 21 | 6/29/1982 | 5-9 | 195 | L | L | AA | | Delta State University |
| 12 | 342 | June-Reg | Robbie McClellan | | P | 22 | 1/31/1981 | 6-1 | 175 | R | R | A+ | | Arizona State University |
| 13 | 372 | June-Reg | Mike Gaffney | | SS | 21 | 11/11/1981 | 6-1 | 180 | R | R | AA | | New York Tech |
| 14 | 402 | June-Reg | Stephen Bray | | P | 22 | 12/22/1980 | 6-2 | 190 | R | R | AAA | | University of New Haven |
| 15 | 432 | June-Reg | Jake Mullis | | P | 22 | 1/22/1981 | 6-2 | 215 | R | R | A | | University of North Carolina-Wilmington |
| 16 | 462 | June-Reg | Bryan Graham | | OF | 22 | 6/8/1981 | 6-1 | 185 | L | L | A | | William Paterson University of New Jersey |
| 17 | 492 | June-Reg | Keoni Ruth | | SS | 18 | 3/21/1985 | 5-11 | 200 | R | R | AAA | | Kamehameha High School (Honolulu,HI) |
| 18 | 522 | June-Reg | Jeff Barry | | OF | 21 | 8/1/1981 | 6-0 | 185 | R | R | A | | University of Vermont |
| 19 | 552 | June-Reg | Nick Tisone | | P | 19 | 8/2/1983 | 6-1 | 185 | R | R | A+ | | Pearl River Community College |
| 20 | 582 | June-Reg | Michael Hernandez | | OF | 19 | 12/18/1983 | 6-0 | 175 | R | R | AA | | Daytona Beach Community College |
| 21 | 612 | June-Reg | Irving Falu | | 2B | 20 | 6/6/1983 | 6-0 | 165 | B | R | AAA | | Indian Hills Community College-Centerville |
| 22 | 642** | June-Reg | Phillip Andersen | | P | 19 | 10/28/1983 | 6-3 | 170 | R | R | A | | Chandler-Gilbert Community College |
| 23 | 672 | June-Reg | Pat Bresnahan | | P | 18 | 4/23/1985 | 6-1 | 195 | R | R | AA | | Dover Sherborn High School (Dover,MA) |
| 24 | 702 | June-Reg | Wayne Daman | | P | 18 | 10/1/1984 | 6-2 | 195 | R | R | A | | Forks High School (Forks,WA) |
| 25 | 732** | June-Reg | Jim West | | P | 18 | 12/21/1984 | 6-2 | 175 | R | R | A+ | | River Valley High School (Fort Mohave,AZ) |
| 26 | 762 | June-Reg | Mitch Goins | | P | 20 | 1/18/1983 | 6-3 | 225 | R | R | Ind | | New Mexico Junior College |
| 27 | 792** | June-Reg | Kendall Thurman | | P | 19 | 4/16/1984 | 6-0 | 185 | R | R | - | | Angelina College |
| 28 | 822 | June-Reg | Derrick Thomas | | P | 18 | 12/6/1984 | 6-4 | 220 | R | R | AAA | | Captain Shreve High School (Shreveport,LA) |
| 29 | 852** | June-Reg | Derrick Arnold | | SS | 19 | 8/3/1983 | 5-10 | 160 | R | R | AAA | | Tallahassee Community College |
| 30 | 882 | June-Reg | Austin Pride | | C | 18 | 9/6/1984 | 6-4 | 210 | R | R | Ind | | Lake Mary High School (Lake Mary,FL) |
| 31 | 912 | June-Reg | D-Antonio Warren | | P | 18 | 11/21/1984 | 6-3 | 205 | L | R | - | | Woodham High School (Pensacola,FL) |
| 32 | 942 | June-Reg | Darrell Qualls | | 3B | 19 | 7/14/1983 | 6-2 | 200 | R | R | Rookie | | Lake City Community College |
| 33 | 972** | June-Reg | Adam Miller | | P | 18 | 4/18/1985 | 5-11 | 180 | R | R | College | | Knoxville High School (Knoxville,IA) |
| 34 | 1002 | June-Reg | Walter Sevilla | | 2B | 21 | 8/24/1981 | 5-8 | 170 | R | R | AA | | University of Tennessee |
| 35 | 1032 | June-Reg | John Sokoll | | P | 18 | 11/9/1984 | 6-6 | 220 | L | L | Rookie | | Solon High School (Solon,IA) |
| 36 | 1062 | June-Reg | Chris Malone | | P | 20 | 6/28/1983 | 6-3 | 215 | R | R | A+ | | San Joaquin Delta College |
| 37 | 1092** | June-Reg | Clay Young | | P | 17 | 10/14/1985 | 6-5 | 220 | L | L | - | | St. Francis High School (La Canada,CA) |
| 38 | 1122 | June-Reg | Jeff Ostrander | | P | 19 | 2/23/1984 | 6-0 | 180 | L | L | College | | Louisburg College |
| 39 | 1152 | June-Reg | Eddie Solis | | 3B | 18 | 9/19/1984 | 5-10 | 195 | R | R | A+ | | Eastlake High School (Chula Vista,CA) |
| 40 | 1182** | June-Reg | Todd Redmond | | P | 18 | 5/17/1985 | 6-3 | 185 | R | R | AA | | Northside Christian High School (St. Petersburg,FL) |
| 41 | 1212** | June-Reg | Andy Underwood | | P | 18 | 5/20/1985 | 6-4 | 185 | R | R | A | | Madera High School (Madera,CA) |
| 42 | 1241 | June-Reg | Josh Hernandez | | 2B | 19 | 11/2/1983 | | | R | R | - | | University of Texas-El Paso |
| 43 | 1270 | June-Reg | Matt Mallory | | P | 18 | 3/4/1985 | 6-3 | 220 | R | R | A | | Grand Junction Central High School (Grand Junction,CO) |
| 44 | 1298** | June-Reg | Vince Berry | | OF | 19 | 9/1/1983 | 5-9 | 170 | R | R | Ind | | Triton College |
| 45 | 1326 | June-Reg | Andrew Groves | | P | 18 | 10/6/1984 | 6-3 | 215 | R | R | A | | John Glenn High School (Walkerton,IN) |
| 46 | 1353** | June-Reg | Robert Coello | | C | 18 | 11/23/1984 | 6-4 | 215 | R | R | Rookie | | Lake Region High School (Eagle Lake,FL) |
| 47 | 1380 | June-Reg | Jimmy Wallace | | P | 18 | 8/9/1984 | 6-3 | 170 | R | R | Ind | | Bossier Parish Community College |
| 48 | 1407 | June-Reg | Zach Weidenaar | | OF | 18 | 10/6/1984 | 6-3 | 195 | R | R | - | | Bozeman High School (Bozeman,MT) |
| 49 | 1433 | June-Reg | Gered Mochizuki | | SS | 17 | 7/7/1985 | 5-7 | 155 | L | R | - | | Baldwin High School (Wailuki,HI) |
| 50 | 1459 | June-Reg | Keven Whalen | | 3B | 18 | 6/7/1985 | 6-0 | 185 | R | R | - | | Mid-Pacific Institute, Kanoehe, Hawaii |
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