| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 10 | June-Reg | Ian Stewart | $$ | 3B | 18 | 4/5/1985 | 6-3 | 200 | L | R | MLB | 2007-2008 | La Quinta High School (Westminster,CA) |
| 2 | 47 | June-Reg | Scott Beerer | $$ | P | 20 | 7/4/1982 | 6-1 | 200 | R | R | A+ | | Texas A&M University |
| 3 | 77 | June-Reg | Aaron Marsden | $$ | P | 21 | 11/18/1981 | 6-5 | 225 | L | L | A+ | | University of Nebraska |
| 4 | 107 | June-Reg | Rick Guarno | | C | 20 | 8/16/1982 | 6-0 | 185 | R | R | AAA | | University of Arkansas-Little Rock |
| 5 | 137 | June-Reg | Christian Colonel | | SS | 21 | 12/25/1981 | 6-2 | 210 | R | R | AAA | | Texas Tech University |
| 6 | 167 | June-Reg | Randy Blood | | 2B | 22 | 1/7/1981 | 5-10 | 185 | L | R | A+ | | University of California-Riverside |
| 7 | 197 | June-Reg | Larry Robles | | P | 22 | 10/29/1980 | 6-2 | 200 | R | R | A+ | | California State University, Dominguez Hills |
| 8 | 227 | June-Reg | Darric Merrell | | P | 21 | 1/22/1982 | 6-4 | 210 | R | R | A+ | | California State University, Fullerton |
| 9 | 257 | June-Reg | Gene Reynolds | | SS | 22 | 12/29/1980 | 5-1 | 165 | R | R | Rookie | | University of Tampa |
| 10 | 287 | June-Reg | Marc Kaiser | | P | 21 | 5/7/1982 | 6-2 | 205 | R | R | AAA | | Lewis-Clark State College |
| 11 | 317 | June-Reg | John Restrepo | | OF | 20 | 7/27/1982 | 6-0 | 185 | L | L | A | | Santa Ana College |
| 12 | 347 | June-Reg | Joe Gaetti | | OF | 21 | 10/16/1981 | 5-11 | 200 | R | R | AAA | | North Carolina State University |
| 13 | 377 | June-Reg | Matt Brinson | | 1B | 22 | 9/9/1980 | 6-5 | 225 | L | L | A- | | Mississippi State University |
| 14 | 407 | June-Reg | J.P. Gagne | | P | 22 | 10/27/1980 | 6-1 | 205 | R | R | A | | University of Notre Dame |
| 15 | 437 | June-Reg | Mark Ion | | P | 22 | 1/8/1981 | 6-2 | 220 | R | R | A | | Lamar University |
| 16 | 467 | June-Reg | Mike Wiley | | P | 22 | 1/27/1981 | 6-1 | 205 | L | L | Rookie | | Stetson University |
| 17 | 497** | June-Reg | Jim Brauer | | P | 20 | 7/16/1982 | 6-4 | 205 | R | R | AA | | University of Michigan |
| 18 | 527 | June-Reg | Friedel Pinkston | | P | 19 | 2/3/1984 | 6-3 | 200 | R | R | Rookie | | Chipola College |
| 19 | 557 | June-Reg | Ryan Mattheus | | P | 19 | 11/10/1983 | 6-3 | 215 | R | R | AA | | Sacramento City College |
| 20 | 587 | June-Reg | Scottie Anderson | | SS | 22 | 5/23/1981 | 5-10 | 170 | R | R | A | | Cal Poly |
| 21 | 617 | June-Reg | Ryan Fox | | OF | 22 | 10/13/1980 | 6-3 | 220 | R | R | A+ | | University of Arkansas |
| 22 | 647** | June-Reg | Adam Daniels | | P | 20 | 8/16/1982 | 6-2 | 190 | L | L | AA | | Eastern Oklahoma State Community College |
| 23 | 677 | June-Reg | Brian Lynch | | P | 22 | 9/21/1980 | 6-2 | 195 | R | R | A+ | | Ball State University |
| 24 | 707 | June-Reg | Jeff Watchko | | P | 22 | 11/7/1980 | 6-3 | 195 | R | R | A | | Georgia Tech |
| 25 | 737 | June-Reg | Jordan Czarniecki | | OF | 22 | 10/4/1980 | 6-1 | 175 | R | R | AA | | University of Tennessee |
| 26 | 767 | June-Reg | Cole Garner | | OF | 18 | 12/15/1984 | 6-0 | 205 | R | R | A+ | | La Quinta High School (Westminster,CA) |
| 27 | 797 | June-Reg | Jason DiAngelo | | P | 22 | 9/9/1980 | 6-2 | 195 | R | R | A+ | | West Virginia University |
| 28 | 827** | June-Reg | Rick Rivas | | P | 19 | 2/12/1984 | 6-1 | 180 | R | R | College | | University of Texas-El Paso |
| 29 | 857** | June-Reg | David Hernandez | | P | 18 | 5/13/1985 | 6-3 | 215 | R | R | AA | | Elk Grove High School (Elk Grove,CA) |
| 30 | 887 | June-Reg | Eric Young | | 2B | 18 | 5/25/1985 | 5-9 | 170 | B | R | AAA | | Piscataway High School (Piscataway,NJ) |
| 31 | 917 | June-Reg | Aaron George | | P | 19 | 9/14/1983 | 6-0 | 195 | R | R | - | | Scottsdale Community College |
| 32 | 947** | June-Reg | Kyle Allen | | P | 19 | 7/27/1983 | 6-0 | 180 | R | L | A | | Orange County Community College |
| 33 | 977 | June-Reg | Garret Baker | | 3B | 19 | 11/16/1983 | 6-2 | 180 | R | R | - | | Modesto Junior College |
| 34 | 1007 | June-Reg | Stoney Stone | | P | 19 | 10/28/1983 | 6-5 | 180 | R | R | - | | Texarkana College |
| 35 | 1037** | June-Reg | Kyle Wright | | P | 20 | 4/27/1983 | 6-3 | 175 | R | R | A+ | | Columbia Basin College |
| 36 | 1067 | June-Reg | Derek Patterson | | P | 20 | 6/7/1983 | 6-2 | 175 | R | L | - | | Northeast Texas Community College |
| 37 | 1097** | June-Reg | Jesse Litsch | | P | 18 | 3/9/1985 | 6-1 | 175 | R | R | MLB | 2007-2008 | Dixie Hollins High School (St. Petersburg,FL) |
| 38 | 1127 | June-Reg | Ryan Snell | | P | 18 | 10/4/1984 | 6-2 | 190 | R | R | - | | Skyline High School (Sammamish,WA) |
| 39 | 1157 | June-Reg | Don Powers | | P | 19 | 9/21/1983 | 6-4 | 175 | R | R | - | | Seminole State College |
| 40 | 1187 | June-Reg | David Hurst | | P | 19 | 5/13/1984 | 6-0 | 195 | L | L | Rookie | | Florida Junior College |
| 41 | 1217 | June-Reg | Brandon Anderson | | OF | 17 | 8/1/1985 | 5-11 | 170 | B | R | - | | Wayland High School (Wayland,MA) |
| 42 | 1246 | June-Reg | Carlos Moreno | | P | 19 | 1/16/1984 | 6-0 | 180 | R | R | - | | Odessa College |
| 43 | 1275** | June-Reg | Justin Jameson | | OF | 17 | 7/12/1985 | | | L | L | - | | Creekside High School (Fairburn,GA) |
| 44 | 1303 | June-Reg | Robert Rose | | P | 20 | 9/11/1982 | 6-2 | 180 | R | R | - | | Cleveland State Community College |
| 45 | 1330** | June-Reg | Joshua Banda | | C | 17 | 9/7/1985 | 6-1 | 195 | R | R | A- | | Artesia High School (Lakewood,CA) |
| 46 | 1357 | June-Reg | Jason Van Kooten | | SS | 18 | 9/1/1984 | 5-11 | 170 | R | R | A+ | | Regis Jesuit High School (Aurora,CO) |
| 47 | 1384 | June-Reg | Jose Cardona | | P | 19 | 3/7/1984 | 6-3 | 160 | L | L | - | | |
| 48 | 1411 | June-Reg | Ryan Flavell | | C | 19 | 8/31/1983 | 6-1 | 209 | R | R | College | | Clarendon College |
| 49 | 1437** | June-Reg | Jason Martinez | | P | 21 | 12/29/1981 | 5-11 | 190 | L | L | A | | Mesa State College |
| 50 | 1463 | June-Reg | Michael Jenkins | | 3B | 19 | 10/19/1983 | 6-3 | 205 | R | R | - | | Hiwassee College |
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