| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 3 | 102 | June-Reg | Calvin Hayes | | SS | 18 | 3/21/1984 | 5-9 | 190 | R | R | A+ | | East Rowan High School (Salisbury,NC) |
| 5 | 162** | June-Reg | Josh Bell | | C | 17 | 7/3/1984 | 6-0 | 215 | R | R | A | | North Side High School (Jackson,TN) |
| 6 | 192 | June-Reg | Cody Haerther | | 3B | 18 | 7/14/1983 | 6-0 | 190 | L | R | AAA | | Chaminade Prep High School (Chatsworth,CA) |
| 7 | 222 | June-Reg | Willie Williamson | | P | 22 | 5/13/1980 | 6-0 | 190 | L | L | A- | | University of Massachusetts at Lowell |
| 8 | 252 | June-Reg | Tyler Parker | | C-1B | 21 | 5/13/1981 | 6-3 | 212 | R | R | AA | | Georgia Tech |
| 9 | 282 | June-Reg | Travis Hanson | | SS | 21 | 1/24/1981 | 6-2 | 195 | L | R | AAA | | University of Portland |
| 10 | 312 | June-Reg | Matt Lemanczyk | | OF | 21 | 10/5/1980 | 6-2 | 190 | R | R | AA | | Sacred Heart University |
| 11 | 342 | June-Reg | David Brockman | | P | 22 | 6/14/1980 | 6-1 | 210 | R | R | A- | | Grand Canyon University |
| 12 | 372 | June-Reg | Bob Runyon | | P | 22 | 6/9/1980 | 6-2 | 200 | R | R | A+ | | Fresno State University |
| 13 | 402 | June-Reg | Reid Gorecki | | CF | 21 | 12/22/1980 | 6-1 | 180 | R | R | AAA | | University of Delaware |
| 14 | 432 | June-Reg | Joe Van Gorder | | P | 21 | 3/10/1981 | 6-2 | 180 | L | L | A- | | West Virginia University |
| 15 | 462 | June-Reg | Daylon Monette | | OF | 21 | 4/8/1981 | 6-3 | 210 | B | R | A | | Oklahoma State University |
| 16 | 492 | June-Reg | Brad Thompson | | P | 20 | 1/31/1982 | 6-1 | 190 | R | R | MLB | 2005-2008 | Dixie State College of Utah |
| 17 | 522 | June-Reg | Chad Clark | | P | | | | | | | College | | USC |
| 18 | 552 | June-Reg | Scott Schweitzer | | P | 22 | 5/4/1980 | 6-3 | 235 | L | L | A+ | | Kentucky Wesleyan College |
| 19 | 582** | June-Reg | Ryan Mulhern | | OF | 21 | 11/29/1980 | 6-1 | 210 | R | R | AAA | | University of South Alabama |
| 20 | 612 | June-Reg | Hal Chafey | | P | 22 | 5/7/1980 | 6-4 | 210 | L | L | Ind | | Francis Marion University |
| 21 | 642 | June-Reg | Gabe Veloz | | 2B | 21 | 8/13/1980 | 6-0 | 190 | R | R | Ind | | New Mexico State University |
| 22 | 672 | June-Reg | Andrew Davidson | | P | 22 | 3/1/1980 | 6-2 | 190 | L | L | A- | | Cal State Northridge |
| 23 | 702 | June-Reg | Rich Scalamandre | | P | 21 | 8/20/1980 | 5-11 | 190 | R | R | AAA | | Dominican College (New York) |
| 24 | 732 | June-Reg | Kevin Coleman | | | 23 | 4/23/1979 | 6-1 | 195 | R | R | A- | | University of Florida |
| 25 | 762 | June-Reg | Kyle McClellan | | P | 18 | 6/12/1984 | 6-2 | 180 | R | R | MLB | 2008-2008 | Hazelwood West High School (Hazelwood,MO) |
| 26 | 792 | June-Reg | Mitch Maio | | P | 23 | 6/17/1979 | 6-0 | 190 | R | R | Rookie | | University of Utah |
| 27 | 822 | June-Reg | Matt Elliott | | P | 18 | 4/6/1984 | 6-0 | 175 | R | R | AA | | Basic High School (Henderson,NV) |
| 28 | 852 | June-Reg | Stewart Young | | | | | | | | | College | | Southern Arkansas University |
| 29 | 882 | June-Reg | Wes Jaillet | | | 22 | 3/20/1980 | 6-3 | 200 | L | R | A- | | Saint Louis University |
| 30 | 912 | June-Reg | Zachary Cates | | 1B | 22 | 9/21/1979 | 6-3 | 210 | L | R | A+ | | Oklahoma State University |
| 31 | 942 | June-Reg | Garris Gonce | | OF | 22 | 9/8/1979 | 6-0 | 200 | R | R | A- | | University of South Carolina |
| 32 | 972 | June-Reg | Sean Kasmar | | SS | | | | 0 | | | - | | Las Vegas High School (Las Vegas,NV) |
| 33 | 1002 | June-Reg | Josh Bridges | | C | 22 | 10/21/1979 | 6-3 | 205 | R | R | A- | | Martin Methodist College (Tenn.) |
| 34 | 1032 | June-Reg | Mike McCoy | | SS | 21 | 4/2/1981 | 5-9 | 170 | R | R | AAA | | University of San Diego |
| 35 | 1062 | June-Reg | Julian Williams | | CF | 18 | 7/27/1983 | 5-11 | 175 | R | R | A | | Long Beach City College |
| 36 | 1092 | June-Reg | James Mondesir | | P | 23 | 6/10/1979 | 6-4 | 210 | B | R | A+ | | Dominican College (New York) |
| 37 | 1122 | June-Reg | Tyler Durham | | | 22 | 10/8/1979 | 6-0 | 195 | R | R | A | | Northwestern State University |
| 38 | 1152** | June-Reg | Matt Varner | | | 20 | 1/16/1982 | 5-11 | 200 | R | R | A+ | | Angelina College |
| 39 | 1182 | June-Reg | Jeff Tolotti | | OF | 22 | 5/20/1980 | 6-2 | 200 | L | L | A- | | University of Nevada |
| 40 | 1212 | June-Reg | Brian Flynn | | P | 23 | 6/27/1979 | 6-1 | 210 | R | R | A+ | | St. Thomas Aquinas College |
| 41 | 1242 | June-Reg | Jonathan Estes | | P | 22 | 5/13/1980 | 6-4 | 210 | L | R | A+ | | Freed-Hardeman University (Tenn.) |
| 42 | 1272 | June-Reg | Kevin Estrada | | | 21 | 10/1/1980 | 6-2 | 185 | R | R | AAA | | Pepperdine University |
| 43 | 1301 | June-Reg | Joey Vandever | | OF | 22 | 10/30/1979 | 6-2 | 180 | R | R | A- | | University of Evansville |
| 44 | 1329 | June-Reg | Brock Jacobsen | | OF | 22 | 12/31/1979 | 6-2 | 195 | B | R | A | | Dixie State College of Utah |
| 45 | 1356 | June-Reg | Sean Clark | | P | | | | 0 | | | College | | Chaminade Prep High School (Chatsworth,CA) |
| 46 | 1382 | June-Reg | Jay Galbraith | | P | 21 | 7/18/1980 | 6-3 | 210 | L | L | A+ | | Concordia College (Mich.) |
| 47 | 1408 | June-Reg | Robert Gibson | | 1B-OF | | | | 0 | | | - | | Bellevue East High School (Bellevue,NE) |
| 48 | 1434 | June-Reg | Philip Perry | | | 21 | 8/7/1980 | 6-3 | 206 | R | R | College | | Georgia Tech |
| 49 | 1458 | June-Reg | David Dennis | | P | | | | 0 | | | - | | Valhalla High School (El Cajon,CA) |
| 50 | 1482** | June-Reg | John Powell | | P | 17 | 7/30/1984 | 6-5 | 201 | R | R | Rookie | | McGehee High School (Tillar,AR) |
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