| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 17 | June-Reg | Dan Denham | $$ | P | 18 | 12/24/1982 | 6-1 | 195 | R | R | AAA | | Deer Valley High School (Antioch,CA) |
| 1 | 27** | June-Reg | Alan Horne | $$ | P | 18 | 1/5/1983 | 6-4 | 195 | R | R | AAA | | Marianna High School (Marianna,FL) |
| 1 | 35 | June-Reg | J.D. Martin | $$ | P | 18 | 1/2/1983 | 6-5 | 175 | R | R | AAA | | Burroughs High School (Ridgecrest,CA) |
| 1 | 43 | June-Reg | Mike Conroy | $$ | OF | 18 | 10/3/1982 | 6-3 | 190 | L | L | A+ | | Boston College High School (Dorchester,MA) |
| 2 | 51 | June-Reg | Jake Dittler | $$ | P | 18 | 11/24/1982 | 6-4 | 220 | R | R | AAA | | Green Valley High School (Henderson,NV) |
| 3 | 97 | June-Reg | Nick Moran | $$ | P | 21 | 1/3/1980 | 6-5 | 195 | R | R | A+ | | Fresno State University |
| 4 | 127 | June-Reg | Travis Foley | | P | 18 | 3/11/1983 | 6-1 | 190 | R | R | AAA | | Butler High School (Louisville,KY) |
| 5 | 157 | June-Reg | Marcos Mendoza | | P | 20 | 10/31/1980 | 5-10 | 180 | L | L | AA | | San Diego State University |
| 6 | 187 | June-Reg | Jim Ed Warden | | P | 22 | 5/7/1979 | 6-7 | 195 | R | R | AAA | | Tennessee Technological University |
| 7 | 217 | June-Reg | Josh Noviskey | | C | 18 | 3/15/1983 | 6-4 | 210 | B | R | A | | Newton High School (Newton,NJ) |
| 8 | 247 | June-Reg | Miguel Quintana | | OF | 22 | 6/29/1979 | 6-1 | 195 | L | R | AA | | Florida International University |
| 9 | 277 | June-Reg | Luke Scott | | OF | 23 | 6/25/1978 | 6-0 | 210 | L | R | MLB | 2005-2008 | Oklahoma State University |
| 10 | 307 | June-Reg | Brian Harrison | | P | | | | | | | College | | Dalton High School (Dalton,GA) |
| 11 | 337 | June-Reg | Brad Guglielmelli | | C | 21 | 10/31/1979 | 6-0 | 190 | R | R | A- | | Allan Hancock College |
| 12 | 367 | June-Reg | Scott Sturkie | | P | 22 | 6/12/1979 | 6-3 | 210 | R | R | AAA | | Coastal Carolina University |
| 13 | 397 | June-Reg | Matt Knox | | IF | 21 | 12/29/1979 | 6-4 | 215 | R | R | A+ | | Millersville University of Pennsylvania |
| 14 | 427 | June-Reg | Doug Lantz | | P | 21 | 8/26/1979 | 6-1 | 180 | R | R | AA | | University of Kansas |
| 15 | 457 | June-Reg | Martin Vergara | | P | | | | | | | College | | DePaul High School (Wayne,NJ) |
| 16 | 487 | June-Reg | Sean Smith | | P | 17 | 10/13/1983 | 6-4 | 180 | R | R | AAA | | College Park High School (Pleasant Hill,CA) |
| 17 | 517** | June-Reg | Dave Jensen | | 1B | 21 | 12/16/1979 | 6-3 | 215 | L | L | A+ | | Brigham Young University |
| 18 | 547 | June-Reg | T.J. Burton | | P | 17 | 7/30/1983 | 6-3 | 170 | R | R | AA | | Notre Dame High School (Ottawa,ON) |
| 19 | 577 | June-Reg | Luis Alvarado | | P | 18 | 9/11/1982 | 5-11 | 160 | L | L | Ind | | Puerto Rico. (Puerto Rico.) |
| 20 | 607 | June-Reg | Michael Rogers | | P | 22 | 9/7/1978 | 6-4 | 210 | R | R | A- | | Oral Roberts University |
| 21 | 637 | June-Reg | Richard Spaulding | | P | 20 | 10/27/1980 | 6-3 | 160 | L | L | Rookie | | Lexington Community College |
| 22 | 667 | June-Reg | Jimmy Schultz | | P | 18 | 9/12/1982 | 6-3 | 170 | R | R | Rookie | | Klein Forest High School (Houston,TX) |
| 23 | 697 | June-Reg | Kenton Myers | | C | 21 | 4/14/1980 | 6-1 | 200 | R | R | AAA | - | Mesa State College |
| 24 | 727 | June-Reg | Matt Blethen | | P | 21 | 2/23/1980 | 6-3 | 210 | L | L | A | | West Virginia University |
| 25 | 757 | June-Reg | Rickie Morton | | IF | 22 | 9/15/1978 | 6-3 | 200 | R | R | A+ | | University of the Pacific |
| 26 | 787 | June-Reg | Bryce Uegawachi | | IF | 22 | 4/28/1979 | 5-6 | 150 | B | R | A- | | Hawaii Pacific University |
| 27 | 817** | June-Reg | Josh Lex | | C | 19 | 10/7/1981 | 5-11 | 210 | R | R | A+ | | Sacramento City College |
| 28 | 847** | June-Reg | Brandon Harmsen | | P | 19 | 12/13/1981 | 6-3 | 200 | R | R | A+ | | Grand Rapids Community College |
| 29 | 877** | June-Reg | Chris Hunter | | P | 20 | 12/12/1980 | 6-4 | 200 | R | R | AAA | | Utah Valley State College |
| 30 | 907 | June-Reg | Keith Lillash | | 2B | 22 | 4/8/1979 | 5-11 | 200 | R | R | A- | | Cleveland State University |
| 31 | 937 | June-Reg | Brian Kirby | | C | 21 | 8/3/1979 | 6-2 | 190 | L | R | AAA | | University of Arkansas-Little Rock |
| 32 | 967 | June-Reg | Andrew Baxter | | IF | 22 | 4/8/1979 | 6-4 | 210 | L | R | A- | | East Tennessee State University |
| 33 | 997 | June-Reg | Chad Peshke | | IF | 21 | 9/10/1979 | 5-9 | 185 | R | R | A | | University of California-Santa Barbara |
| 34 | 1027 | June-Reg | Aaron Mardsen | | P | 19 | 11/18/1981 | 6-5 | 215 | L | L | - | - | Hutchinson Community College |
| 35 | 1057 | June-Reg | Chris Cooper | | P | 22 | 10/31/1978 | 5-11 | 190 | L | L | AAA | | University of New Mexico |
| 36 | 1087 | June-Reg | Jose Cruz | | OF | 18 | 10/21/1982 | 6-1 | 180 | B | R | A- | | Metropolitan University (San Juan,PR) |
| 37 | 1117 | June-Reg | Todd Culp | | P | 22 | 8/7/1978 | 6-4 | 215 | R | R | A- | | University of the Pacific |
| 38 | 1147 | June-Reg | Neto Quiroz | | P | | | | 0 | | | - | | Saddleback College |
| 39 | 1177 | June-Reg | Brian Farman | | P | 22 | 10/9/1978 | 6-3 | 206 | R | R | A- | | Pacific Lutheran University |
| 40 | 1207 | June-Reg | Aaron Russell | | P | | | | 0 | | | - | | Cerro Coso Community College |
| 41 | 1236** | June-Reg | Ross Lewis | | P-RF | 17 | 8/17/1983 | 6-8 | 201 | R | R | - | | University Christian High School (Jacksonville,FL) |
| 42 | 1264** | June-Reg | Kyle Allen | | P | 17 | 7/27/1983 | 6-0 | 180 | R | L | A | | Trabuco Hills High School (Mission Viejo,CA) |
| 43 | 1292** | June-Reg | Vince Davis | | | 18 | 8/22/1982 | 6-6 | 245 | R | L | Ind | | New Mexico Junior College |
| 44 | 1320** | June-Reg | Garrett Mock | | | 18 | 4/25/1983 | 6-4 | 215 | R | R | MLB | 2008-2008 | North Shore High School (Houston,TX) |
| 45 | 1348 | June-Reg | Brett Ashmun | | P | 18 | 8/4/1982 | 6-4 | 180 | R | R | - | | Modesto Junior College |
| 46 | 1376 | June-Reg | Todd Pennington | | P | 21 | 4/6/1980 | 6-2 | 210 | R | R | AA | | Southeast Missouri State University |
| 47 | 1403 | June-Reg | Billy Brian | | P | 22 | 11/7/1978 | 6-5 | 230 | R | R | A | | Louisiana State University |
| 48 | 1429 | June-Reg | Douglas Brooks | | P | 18 | 8/12/1982 | 6-3 | 205 | R | R | A | | Henry Ford Community College |
| 49 | 1454 | June-Reg | Jason Columbus | | 1B | 21 | 9/27/1979 | 6-6 | 230 | R | R | A | | New Mexico Junior College |
| 50 | 1477** | June-Reg | James Burok | | | 18 | 11/16/1982 | 6-3 | 212 | R | R | A+ | | Valley View high school Archbald,PA High School (Archbald,PA) |
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