| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 36 | June-Reg | Michael Garciaparra | $$ | SS | 18 | 4/2/1983 | 6-1 | 160 | R | R | AAA | | Don Bosco High School (La Habra Heights,CA) |
| 2 | 49 | June-Reg | Rene Rivera | $$ | C | 17 | 7/31/1983 | 5-10 | 190 | R | R | MLB | 2004-2006 | Papa Juan XXIII (Bayamon,PR) |
| 2 | 67 | June-Reg | Mike Wilson | $$ | OF | 18 | 6/29/1983 | 6-2 | 240 | B | R | AA | | Booker T. Washington High School (Tulsa,OK) |
| 3 | 80 | June-Reg | Lazaro Abreu | $$ | C | 19 | 12/2/1981 | 6-2 | 195 | R | R | Rookie | | |
| 3 | 99 | June-Reg | Tim Merritt | $$ | IF | 21 | 2/7/1980 | 6-0 | 180 | R | R | AA | | University of South Alabama |
| 4 | 129 | June-Reg | Bobby Livingston | | P | 18 | 9/3/1982 | 6-3 | 191 | L | L | MLB | 2006-2007 | Trinity Christian High School (Lubbock,TX) |
| 5 | 159 | June-Reg | John Cole | | OF | 21 | 1/11/1980 | 5-11 | 185 | R | R | A | | University of Nebraska |
| 6 | 189 | June-Reg | Justin Ockerman | | P | 18 | 1/8/1983 | 6-10 | 250 | L | R | A | | Garden City High School (Garden City,MI) |
| 7 | 219** | June-Reg | John Axford | | P | 18 | 4/1/1983 | 6-5 | 185 | R | R | AAA | | Assumption College (ON) |
| 8 | 249 | June-Reg | Jeff Ellena | | IF | 21 | 11/3/1979 | 6-0 | 175 | R | R | A | | Cal Poly Pomona |
| 9 | 279 | June-Reg | Justin Blood | | P | 21 | 11/20/1979 | 6-3 | 215 | L | L | A+ | | Franklin Pierce College |
| 10 | 309 | June-Reg | Beau Hintz | | P | 21 | 5/12/1980 | 6-4 | 210 | L | L | A | | Fresno State University |
| 11 | 339 | June-Reg | Josh Ellison | | OF | 17 | 7/24/1983 | 5-10 | 200 | R | R | AAA | | Westminster Academy High School (Fort Lauderdale,FL) |
| 12 | 369 | June-Reg | Mike Hrynio | | 3B | 18 | 11/18/1982 | 6-2 | 190 | R | R | AAA | | Dover High School (Dover,NJ) |
| 13 | 399 | June-Reg | Jason Van Meetren | | OF | 21 | 10/4/1979 | 6-3 | 200 | R | R | A+ | | Stanford University |
| 14 | 429 | June-Reg | Blake Woods | | SS | 22 | 1/5/1979 | 6-2 | 190 | R | R | A+ | | Grand Canyon University |
| 15 | 459 | June-Reg | Chris Colton | | OF | 18 | 9/21/1982 | 6-1 | 195 | R | R | A+ | | Newnan High School (Newnan,GA) |
| 16 | 489 | June-Reg | Sean Peless | | IF | 20 | 12/24/1980 | 6-5 | 230 | L | L | A | - | Edmonds Community College |
| 17 | 519 | June-Reg | Ramon Royce | | P | 21 | 9/22/1979 | 6-5 | 215 | R | R | A | | Lewis and Clark College |
| 18 | 549 | June-Reg | John Williamson | | OF | 22 | 8/23/1978 | 6-1 | 200 | B | R | A+ | | East Carolina University |
| 19 | 579 | June-Reg | Brian Sabourin | | P | 17 | 8/26/1983 | 6-3 | 195 | R | R | Rookie | | Dakota Collegiate Institute High School (Winnipeg,MB) |
| 20 | 609** | June-Reg | David Purcey | | P | 19 | 4/22/1982 | 6-5 | 240 | L | L | MLB | 2008-2008 | Trinity Christian Academy High School (Addison,TX) |
| 21 | 639 | June-Reg | Matt Ware | | OF | 18 | 12/2/1982 | 6-3 | 205 | R | R | Rookie | | Loyola High School (Los Angeles,CA) |
| 22 | 669** | June-Reg | Ladd Hall | | P | | | | 0 | | | - | | Buena High School (Sierra Vista,AZ) |
| 23 | 699** | June-Reg | Aaron Braithwaite | | CF | | | | 0 | | | - | | Miami Killian High School (Miami,FL) |
| 24 | 729** | June-Reg | Garry Bakker | | P | 18 | 3/28/1983 | 6-2 | 216 | R | R | A+ | | Suffern High School (Suffern,NY) |
| 25 | 759 | June-Reg | Eddie Olszta | | 3B | 22 | 3/8/1979 | 5-10 | 180 | R | R | AAA | | Butler University |
| 26 | 789 | June-Reg | Jon Nelson | | 1B | 21 | 1/16/1980 | 6-5 | 210 | R | R | AAA | | Dixie State College of Utah |
| 27 | 819 | June-Reg | Timothy Bausher | | P | 22 | 4/23/1979 | 6-4 | 205 | R | R | AAA | | Kutztown University of Pennsylvania |
| 28 | 849 | June-Reg | David Morrow | | P | 20 | 6/28/1981 | 6-1 | 200 | R | R | A | | Grayson County Junior College |
| 29 | 879** | June-Reg | Kyle Aselton | | P | 18 | 2/28/1983 | 6-5 | 215 | R | L | AA | | W.F. West High School (Chehalis,WA) |
| 31 | 939 | June-Reg | Jason Rainey | | OF | 22 | 6/11/1979 | 6-0 | 185 | L | L | A+ | | Texas Tech University |
| 32 | 969 | June-Reg | Bryan Vickers | | | 18 | 4/12/1983 | 6-4 | 225 | R | R | Ind | | Perrysburg High School (Perrysburg,OH) |
| 33 | 999 | June-Reg | Tom Keefer | | P | 18 | 9/20/1982 | 6-2 | 180 | R | R | College | | Byng High School (Ada,OK) |
| 34 | 1029** | June-Reg | Trevor Heid | | OF | 19 | 4/30/1982 | 6-3 | 210 | R | R | A+ | | Dixie State College of Utah |
| 35 | 1059 | June-Reg | Todd Holliday | | P | | | | 0 | | | - | | South Charleston High School (South Charleston,WV) |
| 36 | 1089 | June-Reg | Ben Hudson | | C | 21 | 11/4/1979 | 6-4 | 210 | R | R | A+ | | Truett-McConnell College |
| 37 | 1119 | June-Reg | Miguel Martinez | | P | 18 | 10/22/1982 | 6-2 | 190 | L | L | A+ | | Miami-Dade College |
| 38 | 1149 | June-Reg | Bob Cramer | | P | 21 | 10/28/1979 | 6-1 | 190 | L | L | AA | | Long Beach State University |
| 39 | 1179** | June-Reg | Justin Ruchti | | C | 20 | 12/11/1980 | 6-2 | 200 | R | R | AA | | Klein Forest High School (Houston,TX) |
| 40 | 1209 | June-Reg | Marquis Pettis | | RF | | | 6-3 | 0 | L | L | A- | | Diablo Valley College |
| 41 | 1238** | June-Reg | Kevin Guyette | | | 18 | 12/3/1982 | 6-3 | 205 | R | R | AAA | | Chaparral High School (Scottsdale,AZ) |
| 42 | 1266 | June-Reg | Ryan Brincat | | RF | 17 | 7/11/1983 | 6-3 | 200 | L | L | - | | Mira Costa High School (Manhattan Beach,CA) |
| 43 | 1294** | June-Reg | Bradley Pahs | | C | 18 | 4/22/1983 | 6-0 | 175 | R | R | - | | Chesterton High School (Chesterton,IN) |
| 44 | 1322 | June-Reg | William Keyes | | P | 17 | 10/8/1983 | 6-4 | 210 | R | R | College | | St. James High School (Hagerstown,MD) |
| 45 | 1350 | June-Reg | Brandon Fusilier | | | 19 | 11/3/1981 | 6-2 | 200 | R | R | College | | Navarro College |
| 46 | 1378 | June-Reg | Alan Gannaway | | P | 18 | 10/22/1982 | 6-6 | 190 | R | R | - | | Bessemer Academy High School (Bessemer,AL) |
| 47 | 1405** | June-Reg | Ethan Katz | | P | 17 | 7/4/1983 | 6-5 | 210 | R | R | A | | University High School (Los Angeles,CA) |
| 48 | 1431** | June-Reg | Luis Dejesus | | SS | | | | 0 | | | - | | Teodoro Aguilar Mora High School (Yabucoa,PR) |
| 49 | 1456 | June-Reg | Nicholaus Hamilton | | OF | | | | 0 | | | - | | West Lowndes High School (Starkville,MS) |
| 50 | 1479 | June-Reg | Brandon Espinosa | | P | 19 | 9/20/1981 | 6-6 | 200 | R | R | College | | Santa Ana College |
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