| 1 | 1 | June-Reg | Joe Mauer | $$ | C | 18 | 4/19/1983 | 6-4 | 220 | L | R | MLB | 2004-2008 | Cretin-Derham Hall High School (St. Paul,MN) |
| 2 | 45 | June-Reg | Scott Tyler | $$ | P | 18 | 8/20/1982 | 6-5 | 210 | R | R | AA | | Downington High School (Downington,PA) |
| 3 | 77 | June-Reg | Jose Morales | $$ | SS | 18 | 2/20/1983 | 5-11 | 170 | B | R | MLB | 2007-2007 | Academia de Providencia (Rio Piedras,PR) |
| 4 | 107 | June-Reg | Angel Garcia | | P | 17 | 10/28/1983 | 6-6 | 200 | R | R | AA | | Nicolas Sevilla High School (Toa Alta,PR) |
| 9 | 257 | June-Reg | Dusty Gomon | | 1B | 18 | 9/3/1982 | 6-3 | 190 | R | R | A+ | | Terry Parker High School (Jacksonville,FL) |
| 10 | 287 | June-Reg | Garrett Guzman | | OF | 18 | 2/7/1983 | 5-10 | 170 | L | L | AAA | | Green Valley High School (Henderson,NV) |
| 11 | 317 | June-Reg | Josh Renick | | 2B | 22 | 12/28/1978 | 5-9 | 180 | R | R | AA | | Middle Tennessee State University |
| 12 | 347 | June-Reg | Kaulana Kuhaulua | | IF | 21 | 1/30/1980 | 6-0 | 166 | R | R | AA | | Long Beach State University |
| 14 | 407** | June-Reg | Ryan Anderson | | P | 18 | 9/5/1982 | 6-1 | 180 | L | L | - | | Gaither High School (Tampa,FL) |
| 15 | 437 | June-Reg | Brett Lawson | | P | 22 | 2/21/1979 | 6-7 | 230 | R | R | Ind | | Northwestern Oklahoma State University |
| 16 | 467** | June-Reg | Brian Stitt | | P | 18 | 8/26/1982 | 6-0 | 180 | R | R | AAA | | Wellington Christian High School (Wellington,FL) |
| 17 | 497** | June-Reg | Matt Macri | | SS | 19 | 5/29/1982 | 6-2 | 200 | R | R | MLB | 2008-2008 | Dowling High School (West Des Moines,IA) |
| 18 | 527 | June-Reg | Robert Guzman | | OF | 21 | 1/22/1980 | 5-11 | 200 | L | L | A | | California State University, Fullerton |
| 19 | 557 | June-Reg | Scott Whitrock | | OF | 20 | 12/18/1980 | 6-0 | 180 | R | R | AA | | Madison Area Technical College |
| 20 | 587 | June-Reg | Anthony Albano | | OF | 18 | 3/2/1983 | 6-4 | 200 | L | R | Ind | | Brother Rice High School (Chicago,IL) |
| 21 | 617 | June-Reg | Felix Molina | | 2B | 18 | 5/5/1983 | 5-7 | 160 | B | R | AAA | | Eugenio Maria De Hostos (Mayaguez,PR) |
| 23 | 677 | June-Reg | Jake Mauer | | 2B | 22 | 12/20/1978 | 6-2 | 180 | R | R | AA | | Saint Thomas High School (Mendota Heights,MN) |
| 24 | 707 | June-Reg | Bryan Kennedy | | C | 22 | 10/4/1978 | 6-2 | 208 | L | R | AAA | | University of California-Riverside |
| 25 | 737 | June-Reg | Josh Johnson | | P | 18 | 11/3/1982 | 5-10 | 180 | R | R | AAA | | Ridgway High School (Ridgway,PA) |
| 26 | 767** | June-Reg | John Herrera | | | 18 | 3/8/1983 | 6-6 | 195 | R | R | A+ | | Redlands High School (Redlands,CA) |
| 27 | 797 | June-Reg | Justin Elliott | | OF | 19 | 4/27/1982 | 5-11 | 180 | R | R | AAA | | Lake Gibson High School (Lakeland,FL) |
| 31 | 917** | June-Reg | Ben Thomas | | 3B | 19 | 6/30/1982 | 6-0 | 190 | L | R | A+ | | Rapid City Central High School (Rapid City,SD) |
| 32 | 947 | June-Reg | Jason Wilmes | | P | 18 | 4/19/1983 | 6-6 | 215 | L | L | - | | Somerset High School (Somerset,WI) |
| 35 | 1037** | June-Reg | Bookie Gates | | 2B | 21 | 1/31/1980 | 6-2 | 200 | R | R | A- | | Washington State University |
| 39 | 1157 | June-Reg | Nick Niedbalski | | P | 20 | 11/3/1980 | 6-2 | 190 | R | L | Ind | | East Central Community College |
| 41 | 1216 | June-Reg | Ryan Spataro | | OF | 18 | 9/1/1982 | 5-10 | 180 | L | R | A | | St. Peter's Secondary School High School (Barrie,ON) |
| 44 | 1301 | June-Reg | Ryan Hader | | P | 18 | 3/3/1983 | 6-4 | 240 | R | L | Ind | | Belton High School (Belton,MO) |