| 2 | 54 | June-Reg | Mike Rodriguez | $$ | OF | 20 | 10/15/1980 | 5-10 | 162 | L | L | AAA | | University of Miami (Florida) |
| 3 | 86 | June-Reg | Kirk Saarloos | $$ | P | 22 | 5/23/1979 | 6-0 | 185 | R | R | MLB | 2002-2008 | California State University, Fullerton |
| 5 | 146 | June-Reg | Charlton Jimerson | | OF | 21 | 9/22/1979 | 6-3 | 205 | R | R | MLB | 2005-2008 | University of Miami (Florida) |
| 6 | 176 | June-Reg | Russ Rohlicek | | P | 21 | 12/26/1979 | 6-5 | 220 | R | L | AAA | | Long Beach State University |
| 11 | 326 | June-Reg | D.J. Houlton | | P | 21 | 8/12/1979 | 6-4 | 220 | R | R | MLB | 2005-2007 | University of the Pacific |
| 18 | 536 | June-Reg | Joey DeLeon | | P | 18 | 10/21/1982 | 5-11 | 180 | R | R | A | | Nixon-Smiley High School (Nixon,TX) |
| 19 | 566 | June-Reg | Ryan Kochen | | IF | 22 | 6/13/1979 | 6-2 | 195 | R | R | A+ | | Western Michigan University |
| 20 | 596 | June-Reg | Mark Obradovich | | C | 20 | 10/26/1980 | 6-2 | 190 | B | R | AA | - | Gadsden State Community College |
| 21 | 626 | June-Reg | Jeff Derrickson | | C | 18 | 7/27/1982 | 6-3 | 205 | R | R | - | | Bryan Station High School (Lexington,KY) |
| 22 | 656 | June-Reg | Justin Humphries | | C | 18 | 2/24/1983 | 6-4 | 225 | R | R | A+ | | Episcopal High School (Bellaire,TX) |
| 23 | 686 | June-Reg | Matthew Albers | | P | 18 | 1/20/1983 | 6-0 | 195 | L | R | MLB | 2006-2008 | Clements School High School (Sugar Land,TX) |
| 24 | 716 | June-Reg | Cameron Likely | | OF | 23 | 2/2/1978 | 5-10 | 170 | R | R | A+ | | University of South Alabama |
| 25 | 746 | June-Reg | Chad Durham | | P | 22 | 12/22/1978 | 6-2 | 190 | R | R | A- | | Texas Christian University |
| 26 | 776 | June-Reg | Steven Checksfield | | OF | 22 | 6/11/1979 | 6-3 | 225 | R | R | A+ | | Albany High School (Albany,NY) |
| 28 | 836 | June-Reg | Seth Bobbitt | | P | 22 | 3/24/1979 | 6-1 | 180 | R | R | AA | | Birmingham-Southern College |
| 29 | 866** | June-Reg | Raymar Diaz | | OF | 17 | 11/13/1983 | 6-7 | 190 | R | R | A+ | | Luis Hernaiz Verone (Canovanas,PR) |
| 31 | 926 | June-Reg | Brian Middleton | | P | 22 | 11/30/1978 | 6-2 | 200 | R | R | A | | West Virginia State College |
| 33 | 986 | June-Reg | John Fagan | | IF | 21 | 8/8/1979 | 6-5 | 205 | R | R | AA | | San Jose State University |
| 34 | 1016 | June-Reg | Brandon Macchi | | OF | 21 | 9/23/1979 | 6-0 | 180 | B | L | A- | | San Jose State University |
| 35 | 1046 | June-Reg | Travis Teeter | | P | 20 | 7/13/1980 | 6-1 | 210 | R | R | A+ | | Rensselaer Polytechnic Institute |
| 38 | 1136** | June-Reg | Ryan McKeller | | P | 17 | 7/8/1983 | 6-5 | 210 | R | R | AA | | Pflugerville High School (Pflugerville,TX) |
| 43 | 1282 | June-Reg | James McNair | | P | 22 | 5/15/1979 | 6-4 | 205 | R | R | A | | Virginia Commonwealth University |
| 46 | 1366 | June-Reg | Justin Ard | | RF | 18 | 1/12/1983 | 6-5 | 205 | B | R | - | | Clear Lake High School (Houston,TX) |
| 48 | 1421 | June-Reg | Ben Leuthard | | P | 20 | 9/15/1980 | 6-6 | 230 | R | R | College | | San Diego State University |
| 49 | 1446** | June-Reg | Kevin House | | OF | 18 | 7/27/1982 | 5-11 | 195 | R | R | A- | | Alabama Southern Community College |