| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 13 | June-Reg | Casey Kotchman | $$ | IF | 18 | 2/22/1983 | 6-3 | 210 | L | L | MLB | 2004-2008 | Seminole Junior College |
| 1 | 33 | June-Reg | Jeff Mathis | $$ | C | 18 | 3/31/1983 | 6-0 | 180 | R | R | MLB | 2005-2008 | Marianna High School (Marianna,FL) |
| 2 | 57 | June-Reg | Dallas McPherson | $$ | IF | 20 | 7/23/1980 | 6-4 | 210 | L | R | MLB | 2004-2006 | The Citadel |
| 3 | 81 | June-Reg | Steven Shell | $$ | P | 18 | 3/10/1983 | 6-5 | 195 | R | R | AAA | | El Reno High School (El Reno,OK) |
| 3 | 89 | June-Reg | Jake Woods | $$ | P | 19 | 9/3/1981 | 6-1 | 195 | L | L | MLB | 2005-2007 | Bakersfield (CA JC) |
| 4 | 119 | June-Reg | Mike Nickoli | | P | 21 | 3/6/1980 | 6-5 | 200 | R | R | AA | | Birmingham-Southern College |
| 5 | 149 | June-Reg | Brad Pinkerton | | P | 21 | 6/15/1980 | 6-2 | 192 | L | L | Rookie | | Elon University |
| 6 | 179 | June-Reg | Quan Cosby | | OF | 18 | 12/23/1982 | 5-10 | 180 | B | R | A | | Mart High School (Mart,TX) |
| 7 | 209** | June-Reg | Rich Hill | | P | 21 | 3/11/1980 | 6-4 | 180 | L | L | MLB | 2005-2008 | University of Texas-San Antonio |
| 8 | 239 | June-Reg | Justin Turner | | IF | 21 | 12/19/1979 | 6-1 | 195 | L | R | AA | | Warner Southern College (Fla.) |
| 9 | 269** | June-Reg | Devin Ivany | | C | 18 | 7/27/1982 | 6-1 | 178 | R | R | AA | | Cardinal Gibbons High School (Fort Lauderdale,FL) |
| 10 | 299 | June-Reg | Matt Brown | | 3B | 18 | 8/8/1982 | 6-0 | 180 | R | R | MLB | 2007-2008 | Coeur D'Alene High School (Coeur D'Alene,ID) |
| 11 | 329 | June-Reg | Jonathan Shull | | P | 19 | 6/23/1982 | 6-3 | 200 | R | R | Rookie | | Eastside High School (Eastside,IN) |
| 12 | 359 | June-Reg | Ryan Budde | | C | 21 | 8/15/1979 | 5-11 | 190 | R | R | MLB | 2007-2007 | Oklahoma State University |
| 13 | 389 | June-Reg | Tony Arthur | | P | 22 | 12/16/1978 | 6-1 | 215 | L | L | A | | Arkansas State University |
| 14 | 419 | June-Reg | Jason Dennis | | P | 22 | 8/12/1978 | 6-0 | 195 | L | L | A+ | | University of California |
| 15 | 449 | June-Reg | Micah Posey | | P | 18 | 10/18/1982 | 6-5 | 220 | L | L | A+ | | North Florida Christian High School (Tallahassee,FL) |
| 16 | 479 | June-Reg | Al Corbeil | | C | 22 | 12/16/1978 | 6-0 | 190 | L | R | A+ | | Florida Southern College |
| 17 | 509** | June-Reg | Michael Gallaway | | P | | | | 0 | | | - | | Allen High School (Allen,TX) |
| 18 | 539 | June-Reg | Edward Tolzien | | 1B | 21 | 7/11/1979 | 6-4 | 207 | L | L | A | | Illinois State University |
| 19 | 569 | June-Reg | Nick Gorneault | | OF | 22 | 4/19/1979 | 6-3 | 200 | R | R | MLB | 2007-2007 | University of Massachusetts |
| 20 | 599 | June-Reg | Justin Nelson | | OF | 18 | 4/23/1983 | 6-3 | 205 | L | L | Rookie | | Rancho Buena Vista High School (Vista,CA) |
| 21 | 629 | June-Reg | David Gates | | RF | 20 | 9/23/1980 | 6-1 | 200 | R | R | AA | | University of Alabama-Huntsville |
| 22 | 659** | June-Reg | Brock Keffer | | P | | | | 0 | | | - | | La Salle-Peru Township High School (Peru,IL) |
| 23 | 689 | June-Reg | Mitchell Arnold | | P | 19 | 1/31/1982 | 6-9 | 230 | R | R | AAA | | New Mexico Junior College |
| 24 | 719 | June-Reg | William Robbins | | P | | | | 0 | | | - | | Lockhart High School (Lockhart,SC) |
| 25 | 749 | June-Reg | Mark O'Sullivan | | P | 22 | 10/24/1978 | 6-2 | 200 | R | R | AA | | Rollins College |
| 26 | 779 | June-Reg | Jason Durbin | | OF | 18 | 4/13/1983 | 5-11 | 185 | R | R | College | | |
| 27 | 809 | June-Reg | Kelly Sisco | | P | 19 | 10/25/1981 | 6-4 | 190 | L | L | Rookie | | Connors State College |
| 28 | 839 | June-Reg | Ryan Nevins | | OF | 22 | 12/29/1978 | 5-9 | 170 | L | R | A | | New York Tech |
| 29 | 869** | June-Reg | Carlos Corporan | | 1B | 17 | 1/7/1984 | 6-3 | 210 | B | R | AA | | Francisco Oller Catano (PR) |
| 30 | 899 | June-Reg | Kris Sutton | | P | 22 | 10/3/1978 | 6-2 | 205 | R | R | Rookie | | University of Tampa |
| 31 | 929 | June-Reg | Ryan Bailey | | P | 21 | 5/10/1980 | 6-2 | 210 | R | R | Rookie | | University of Utah |
| 32 | 959 | June-Reg | Steve Andrade | | P | 23 | 2/6/1978 | 6-1 | 200 | R | R | MLB | 2006-2006 | California State University, Stanislaus |
| 33 | 989** | June-Reg | Scott Lewis | | | 17 | 9/26/1983 | 6-0 | 185 | L | L | AA | | Washington Court House High School (Washington Court House,OH) |
| 34 | 1019 | June-Reg | Casey Smith | | 2B | 22 | 3/18/1979 | 6-2 | 200 | R | R | AAA | - | Troy State University |
| 35 | 1049 | June-Reg | Blake Allen | | | 21 | 7/12/1979 | 6-4 | 190 | B | R | A- | | University of Alabama-Birmingham |
| 36 | 1079 | June-Reg | Steve Trosclair | | | | | | | | | College | | Southeastern Louisiana University |
| 37 | 1109** | June-Reg | James Morris | | | 18 | 6/3/1983 | 6-8 | 255 | L | L | Rookie | | Eldorado High School (Eldorado,IL) |
| 38 | 1139** | June-Reg | Tom Sgueglia | | 3B | 17 | 1/13/1984 | 6-2 | 205 | R | R | Rookie | | Mount St. Michael Academy High School (Bronx,NY) |
| 39 | 1169 | June-Reg | Jaime Steward | | P | 22 | 1/26/1979 | 6-0 | 180 | L | L | A | | Le Moyne College |
| 40 | 1199 | June-Reg | Alan Crigger | | P | | | | 0 | | | - | | Okaloosa-Walton College |
| 41 | 1228 | June-Reg | Brent Del Chiaro | | C | 22 | 6/26/1979 | 6-3 | 217 | R | R | AAA | | University of Kansas |
| 42 | 1257 | June-Reg | Ryan Webb | | OF | 23 | 5/30/1978 | 6-3 | 190 | R | R | A+ | | Long Beach State University |
| 43 | 1285 | June-Reg | David Bartelt | | | 18 | 3/22/1983 | 6-2 | 190 | R | R | College | | Jesuit High School (Tampa,FL) |
| 44 | 1313 | June-Reg | Mike Eylward | | IF | 21 | 9/28/1979 | 6-2 | 210 | R | R | AAA | | University of South Florida |
| 45 | 1341 | June-Reg | Greg Porter | | OF | 20 | 8/15/1980 | 6-4 | 220 | L | R | AAA | | Texas A&M University |
| 46 | 1369 | June-Reg | Alberto Marrero | | C | 17 | 7/3/1983 | 6-1 | 170 | R | R | - | - | Luis Pales Matos High School (Santa Rosa,PR) |
| 47 | 1396 | June-Reg | Jorge Marrero | | CF | 18 | 1/26/1983 | 5-11 | 145 | R | R | - | - | Jose Collazo Colon High School (Juncos,PR) |
| 48 | 1423** | June-Reg | Collin Mahoney | | C | 18 | 12/26/1982 | 6-3 | 235 | R | R | A | | Mount St. Michael Academy High School (Bronx,NY) |
| 49 | 1448 | June-Reg | Steve Nielsen | | P | | | 6-6 | 200 | R | R | Ind | | Triton College |
| 50 | 1471 | June-Reg | Kevin Letz | | | 18 | 9/27/1982 | 6-2 | 165 | R | R | College | | Hanks High School (El Paso,TX) |
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