| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 29 | June-Reg | Adam Wainwright | $$ | P | 18 | 8/30/1981 | 6-6 | 190 | R | R | MLB | 2005-2008 | Glynn Academy High School (Brunswick,GA) |
| 1 | 30 | June-Reg | Scott Thorman | $$ | IF | 18 | 1/6/1982 | 6-3 | 205 | L | R | MLB | 2006-2007 | Preston High School (Cambridge,ON) |
| 1 | 38 | June-Reg | Kelly Johnson | $$ | P | 18 | 2/22/1982 | 6-1 | 180 | L | R | MLB | 2005-2008 | Westwood High School (Austin,TX) |
| 1 | 40 | June-Reg | Aaron Herr | $$ | IF | 19 | 3/7/1981 | 5-11 | 183 | R | R | AAA | | Hempfield High School (Landisville,PA) |
| 2 | 51 | June-Reg | Bubba Nelson | | P | 18 | 8/26/1981 | 6-2 | 200 | R | R | AAA | | Riverdale Baptist High School (Upper Marlboro,MD) |
| 2 | 70 | June-Reg | Bryan Digby | | P | 18 | 12/31/1981 | 6-2 | 190 | R | R | AA | | McIntosh High School (Peachtree City,GA) |
| 3 | 100 | June-Reg | Blaine Boyer | | P | 18 | 7/11/1981 | 6-3 | 190 | R | R | MLB | 2005-2008 | Walton High School (Marietta,GA) |
| 4 | 106 | June-Reg | Zach Miner | $$ | P | 18 | 3/12/1982 | 6-3 | 190 | R | R | MLB | 2006-2008 | Palm Beach Gardens High School (Palm Beach Gardens,FL) |
| 4 | 130** | June-Reg | Brian Montalbo | | P | 18 | 11/22/1981 | 6-4 | 210 | B | R | A | | A.J. Dimond High School (Anchorage,AK) |
| 5 | 160 | June-Reg | Chris Waters | | P | 19 | 8/17/1980 | 6-0 | 170 | L | L | AAA | | South Florida Community College |
| 6 | 190 | June-Reg | Matt Merricks | | P | 17 | 8/6/1982 | 5-11 | 180 | L | L | AA | | Oxnard High School (Oxnard,CA) |
| 7 | 220 | June-Reg | Brian Almeida | | P | 18 | 7/26/1981 | 6-5 | 210 | L | R | A | | Lemon Bay High School (Englewood,FL) |
| 8 | 250 | June-Reg | Robert Perkins | | C | 19 | 4/23/1981 | 5-11 | 210 | R | R | Rookie | | Modesto Junior College |
| 9 | 280 | June-Reg | Ahmad Woods | | OF | 18 | 11/27/1981 | 6-5 | 180 | R | R | Rookie | | Redan High School (Stone Mountain,GA) |
| 10 | 310 | June-Reg | Rod Douglas | | P | 18 | 12/24/1981 | 6-0 | 185 | R | R | Rookie | | Colmesneil High School (Colmesneil,TX) |
| 11 | 340 | June-Reg | Kevin Cust | | RF-C | 18 | 9/6/1981 | 6-1 | 200 | R | R | Rookie | | Immaculata High School (Somerville,NJ) |
| 12 | 370** | June-Reg | Keoni DeRenne | | ss | 21 | 4/30/1979 | 5-7 | 165 | B | R | AAA | | University of Arizona |
| 13 | 400 | June-Reg | Jonathan Rogers | | P | 18 | 7/2/1981 | 6-1 | 180 | R | R | Rookie | | Robert E Lee High School (Midland,TX) |
| 14 | 430 | June-Reg | Mike Machen | | P | 18 | 10/5/1981 | 5-11 | 190 | R | R | Rookie | | McGill-Toolen High School (Mobile,AL) |
| 15 | 460 | June-Reg | Armando Tejero | | 1B | 17 | 7/11/1982 | 6-3 | 180 | L | L | Rookie | | Elvira M Colon (Santa Isabel,PR) |
| 16 | 490 | June-Reg | Andy Bent | | P | 21 | 12/19/1978 | 6-2 | 190 | R | R | A+ | | University of Nebraska |
| 17 | 520 | June-Reg | Trey Hodges | | P | 22 | 6/29/1978 | 6-3 | 187 | R | R | MLB | 2002-2003 | Louisiana State University |
| 18 | 550 | June-Reg | Michael Davern | | P | 18 | 11/22/1981 | 6-4 | 210 | R | R | Ind | | Brea-Olinda High School (Brea,CA) |
| 19 | 580 | June-Reg | Charles Thomas | | OF | 21 | 12/26/1978 | 6-0 | 190 | L | L | MLB | 2004-2005 | Western Carolina University |
| 20 | 610 | June-Reg | Kyle Roat | | C | 20 | 5/14/1980 | 5-10 | 180 | R | R | AA | | Connors State College |
| 21 | 640 | June-Reg | Matt Wright | | P | 18 | 3/13/1982 | 6-4 | 220 | R | R | AAA | | Robinson High School (Robinson,TX) |
| 22 | 670 | June-Reg | Josh Tillery | | P | 21 | 8/2/1978 | 6-6 | 250 | R | R | AA | | Dodge City Community College |
| 23 | 700 | June-Reg | Mike Smalley | | | 21 | 6/22/1979 | 6-1 | 200 | R | L | A+ | | University of Florida |
| 24 | 730 | June-Reg | Robert Moose | | 1B | 22 | 12/2/1977 | 6-4 | 220 | R | R | Rookie | | Bridgewater College (Virginia) |
| 25 | 760** | June-Reg | Tim McClendon | | | 18 | 9/29/1981 | 6-6 | 185 | R | R | Ind | | Dr. Phillips High School (Orlando,FL) |
| 26 | 790 | June-Reg | Alph Coleman | | LF | 21 | 4/8/1979 | 6-3 | 187 | R | R | A+ | | Texas Southern University |
| 27 | 820** | June-Reg | Joshua Wyrick | | LF | 18 | 3/11/1982 | 6-3 | 190 | L | L | A | | Centennial High School (Bakersfield,CA) |
| 28 | 850 | June-Reg | Erick Contreras | | SS | 20 | 9/12/1979 | 5-11 | 165 | B | R | A | | Culver-Stockton College (San Juan,PR) |
| 29 | 880 | June-Reg | Adam LaRoche | | 1B | 20 | 11/6/1979 | 6-3 | 180 | L | L | MLB | 2004-2008 | Seminole State College |
| 30 | 910 | June-Reg | Quentin Jones | | P | 21 | 4/14/1979 | 6-4 | 210 | R | R | A | | Norfolk State University |
| 31 | 940** | June-Reg | Delwyn Young | | 2B | 18 | 6/30/1982 | 5-10 | 209 | B | R | MLB | 2006-2008 | Littlerock High School (Lancaster,CA) |
| 32 | 970** | June-Reg | Callix Crabbe | | 2B | 17 | 2/14/1983 | 5-8 | 190 | B | R | MLB | 2008-2008 | Stone Mountain High School (Lithonia,GA) |
| 33 | 1000** | June-Reg | Anthony Gwynn | | OF | 17 | 10/4/1982 | 6-0 | 185 | L | R | MLB | 2006-2008 | Poway High School (Poway,CA) |
| 34 | 1030** | June-Reg | Adam Brandenburg | | P | 18 | 8/17/1981 | 6-5 | 225 | L | L | AA | | South Gwinnett High School (Snellville,GA) |
| 35 | 1060 | June-Reg | William Hall | | P | | | | 0 | | | - | | Evant School High School (Evant,TX) |
| 36 | 1090 | June-Reg | Efren Lira | | P | 18 | 8/5/1981 | 6-3 | 240 | R | R | A | | Mount San Antonio College |
| 37 | 1120** | June-Reg | Josh Parker | | P | 19 | 1/12/1981 | 6-5 | 220 | R | R | AA | | Wallace Community College |
| 38 | 1150 | June-Reg | Frank Arteaga | | P | 18 | 10/4/1981 | 6-1 | 170 | R | R | A | | East Los Angeles Junior College |
| 39 | 1180 | June-Reg | Jimmy Rhodes | | | 18 | 5/21/1982 | 6-3 | 210 | R | R | College | | Jefferson High School (Shepherdstown,WV) |
| 40 | 1209** | June-Reg | Adam Hilzendeger | | P | 18 | 1/25/1982 | 6-4 | 190 | R | R | - | | Palmdale High School (Palmdale,CA) |
| 41 | 1238** | June-Reg | Shane Hawk | | P | 18 | 9/10/1981 | 6-4 | 180 | R | L | A+ | | Midwest City High School (Midwest City,OK) |
| 42 | 1267 | June-Reg | Zachariah Watson | | P | | | | 0 | | | - | | Columbus High School (Columbus,GA) |
| 43 | 1295 | June-Reg | Daniel Anderson | | CF | | | | 0 | | | - | | Temple University |
| 44 | 1321 | June-Reg | Tanner Holecek | | OF | | | | 0 | | | - | | Temple University |
| 45 | 1347 | June-Reg | Craig Bragg | | CF | | | | 0 | | | - | | |
| 46 | 1371** | June-Reg | Brandon Green | | | 18 | 8/12/1981 | 6-0 | 195 | B | R | A | | Adair High School (Adair,OK) |
| 47 | 1392 | June-Reg | Justin Bergh | | P | | | | 0 | | | - | | Oak Hall High School (Gainesville,FL) |
| 48 | 1412** | June-Reg | Jason Herman | | P | 18 | 12/9/1981 | 6-3 | 210 | R | R | A | | Marshfield High School (Marshfield,MO) |
| 49 | 1432** | June-Reg | Bill Edwards | | | 19 | 3/26/1981 | 6-3 | 185 | R | R | AA | | Evangelical Christian High School (Germantown,TN) |
| 50 | 1452 | June-Reg | Drew Jackson | | of | 16 | 10/12/1983 | 6-0 | 200 | L | L | Ind | | University High School (Morgantown,WV) |
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