| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 20 | June-Reg | Vince Faison | $$ | OF | 18 | 1/21/1981 | 6-0 | 180 | L | L | AAA | | Toombs County High School (Lyons,GA) |
| 1 | 28 | June-Reg | Gerik Baxter | $$ | P | 19 | 3/11/1980 | 6-2 | 185 | R | R | A | | Edmonds-Woodway High School (Edmonds,WA) |
| 1 | 29 | June-Reg | Omar Ortiz | $$ | P | 21 | 9/11/1977 | 6-1 | 210 | B | R | AA | | University of Texas-Pan American |
| 1 | 41 | June-Reg | Casey Burns | $$ | P | 21 | 7/24/1977 | 6-1 | 185 | R | R | A | | University of Richmond |
| 1 | 49 | June-Reg | Mike Bynum | $$ | P | 21 | 3/20/1978 | 6-4 | 200 | L | L | MLB | 2002-2004 | University of North Carolina |
| 1 | 51 | June-Reg | Nick Trzesniak | | C | 18 | 11/19/1980 | 6-0 | 215 | R | R | AAA | | Victor J. Andrew High School (Tinley Park,IL) |
| 2 | 79** | June-Reg | Alberto Concepcion | | C-3B | 18 | 4/18/1981 | 6-1 | 220 | R | R | AAA | | El Segundo High School (El Segundo,CA) |
| 3 | 112 | June-Reg | Joshua Vitek | | P | 19 | 6/18/1980 | 6-3 | 200 | R | R | A- | | Fayetteville High School (Fayetteville,TX) |
| 4 | 142 | June-Reg | Jason Moore | | SS-2B | 21 | 1/4/1978 | 6-0 | 180 | B | R | AA | | University of Texas |
| 5 | 148 | June-Reg | Chris Heck | | P | 22 | 2/10/1977 | 6-4 | 215 | L | L | Rookie | | Clemson University |
| 5 | 172** | June-Reg | Mike Thompson | | P | 18 | 11/6/1980 | 6-4 | 200 | R | R | MLB | 2006-2007 | Lamar High School (Lamar,CO) |
| 6 | 202 | June-Reg | Blair DeHart | | P | 21 | 5/4/1978 | 6-4 | 190 | R | R | AA | | James Madison University |
| 7 | 232 | June-Reg | John Scheschuk | | 1B | 22 | 2/2/1977 | 6-2 | 208 | L | L | AAA | - | Texas A&M University |
| 8 | 262 | June-Reg | Todd Donovan | | OF | 20 | 8/12/1978 | 6-1 | 175 | R | R | AAA | - | Siena College |
| 9 | 292 | June-Reg | John Puccinelli | | 3B | 18 | 3/5/1981 | 6-4 | 180 | R | R | A | | Notre Dame High School (Sherman Oaks,CA) |
| 10 | 322 | June-Reg | Todd Shiyuk | | P | 22 | 3/1/1977 | 6-0 | 200 | L | L | AA | | University of Alabama-Huntsville |
| 11 | 352 | June-Reg | Brian Adams | | P | | | | | | | College | | Clemson University |
| 12 | 382 | June-Reg | Brian Ward | | IF | 21 | 7/7/1977 | 5-8 | 180 | R | R | A+ | | North Carolina State University |
| 13 | 412 | June-Reg | Tony Adler | | P | | | | | | | College | | Greenhill School High School (Dallas,TX) |
| 14 | 442 | June-Reg | Bobby Scales | | 2B | 21 | 10/4/1977 | 6-0 | 175 | B | R | AAA | | University of Texas-San Antonio |
| 15 | 472 | June-Reg | Jake Peavy | | P | 18 | 5/31/1981 | 6-1 | 180 | R | R | MLB | 2002-2008 | St. Paul's High School (Mobile,AL) |
| 16 | 502 | June-Reg | Gregory Ienni | | CF | 21 | 8/8/1977 | 6-1 | 188 | R | R | Rookie | | Cal State Los Angeles |
| 17 | 532** | June-Reg | Brandon Fahey | | SS-3B | 18 | 1/18/1981 | 6-2 | 180 | L | R | MLB | 2006-2008 | Duncanville High School (Duncanville,TX) |
| 18 | 562 | June-Reg | Andres Pagan | | C | 18 | 3/18/1981 | 6-4 | 200 | R | R | A+ | | Luis Munoz Marin High School (Anasco,PR) |
| 19 | 592 | June-Reg | Jake Huff | | C | 21 | 7/8/1977 | 6-3 | 210 | R | R | AA | | Mesa State College |
| 20 | 622 | June-Reg | Matt Moran | | P | | | | | | | College | | Cosumnes River College |
| 21 | 652 | June-Reg | Troy Schader | | SS | 22 | 3/5/1977 | 6-1 | 200 | R | R | A+ | | Oregon State University |
| 22 | 682** | June-Reg | Kevin Howard | | | 18 | 6/25/1981 | 6-2 | 180 | L | R | AAA | | Westlake High School (Westlake Village,CA) |
| 23 | 712** | June-Reg | Mike Mueller | | P | 18 | 8/22/1980 | 6-5 | 220 | R | R | A+ | | West Bend East High School (West Bend,WI) |
| 24 | 742 | June-Reg | Jeremy Alford | | | | | | | | | College | | Benton High School (Benton,LA) |
| 25 | 772 | June-Reg | Anthony Vandemore | | RF | 22 | 6/10/1977 | 6-3 | 200 | L | R | A | | Truman State University |
| 26 | 802 | June-Reg | Shawn Lynn | | P | | | | 0 | | | - | | Seminole Junior College |
| 27 | 832 | June-Reg | Christopher Adolph | | OF | | | | 0 | | | - | | University of Nevada |
| 28 | 862 | June-Reg | Chad Dias | | | | | | | | | College | | Bellevue Community College (WA) |
| 29 | 892 | June-Reg | Barry Long | | OF | | | | 0 | | | - | | Evans High School (Evans,GA) |
| 30 | 922** | June-Reg | Jason Hammond | | CF | | | | 0 | | | - | | West Hills High School (Santee,CA) |
| 31 | 952** | June-Reg | Jarrett Roenicke | | RF | 19 | 1/15/1980 | 6-2 | 195 | L | L | A- | | Yuba (Calif.) Community College |
| 32 | 982 | June-Reg | Jeremy Webster | | P | 20 | 3/20/1979 | 6-0 | 190 | L | L | A+ | | Salt Lake Community College |
| 33 | 1012** | June-Reg | Shawn Hill | | P | 18 | 4/28/1981 | 6-2 | 185 | R | R | MLB | 2004-2008 | Bishop PF Reding High School (Georgetown,ON) |
| 34 | 1042 | June-Reg | Michael Saunches | | 1B | 17 | 7/6/1981 | 6-3 | 250 | L | L | Ind | | Argenta-Oreana High School (Argenta,IL) |
| 35 | 1072 | June-Reg | Jeff Rizzo | | | 21 | 1/17/1978 | 6-0 | 190 | L | R | Rookie | | Stanford University |
| 36 | 1102** | June-Reg | Anthony Bianucci | | OF | 18 | 4/25/1981 | 5-11 | 180 | B | R | Rookie | | Woodson High School (Fairfax,VA) |
| 37 | 1132 | June-Reg | Kevin Okimoto | | 1B | | | | 0 | | | - | | Santa Clara University |
| 38 | 1162** | June-Reg | Marcellus Dawson | | | | | | | | | College | | Wauwatosa East High School (Milwaukee,WI) |
| 39 | 1192 | June-Reg | Chris Wilkins | | | | | | | | | College | | The Dalles High School (The Dalles,OR) |
| 40 | 1222 | June-Reg | Jared Vance | | P | | | | 0 | | | - | | Connorsville High School (Connorsville,IN) |
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