| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 5 | June-Reg | B.J. Garbe | $$ | OF | 18 | 3/3/1981 | 6-2 | 195 | R | R | AA | | Moses Lake High School (Moses Lake,WA) |
| 2 | 56 | June-Reg | Rob Bowen | | C | 18 | 2/24/1981 | 6-2 | 211 | R | R | MLB | 2003-2008 | Homestead High School (Fort Wayne,IN) |
| 3 | 89 | June-Reg | Justin Morneau | | 1B | 18 | 5/15/1981 | 6-4 | 205 | L | R | MLB | 2003-2008 | New Westminster High School (New Westminster,BC) |
| 4 | 119 | June-Reg | Jeff Randazzo | $$ | P | 17 | 8/12/1981 | 6-7 | 200 | R | L | AA | | |
| 5 | 149 | June-Reg | Brent Schoening | | P | 21 | 4/7/1978 | 6-1 | 195 | R | R | AAA | | Auburn University |
| 6 | 179 | June-Reg | Brian Wolfe | | P | 18 | 12/29/1980 | 6-3 | 220 | R | R | MLB | 2007-2008 | Servite High School (Anaheim,CA) |
| 7 | 209** | June-Reg | Darren Ciraco | | OF | 18 | 4/6/1981 | 6-2 | 200 | R | R | A+ | | Pelham Memorial High School (Pelham,NY) |
| 8 | 239 | June-Reg | Matt Scanlon | | IF | 21 | 6/19/1978 | 5-11 | 181 | L | R | AAA | | University of Minnesota |
| 9 | 269 | June-Reg | Grant Gregg | | P | 19 | 6/4/1980 | 6-3 | 230 | L | L | AA | | McLennan Community College |
| 10 | 299 | June-Reg | Jim Caine | | P | | | | | | | College | | St. Charles High School (St. Charles,IL) |
| 11 | 329** | June-Reg | Michael Prochaska | | P | 19 | 5/23/1980 | 6-1 | 200 | L | L | AAA | | Leesville Road High School (Raleigh,NC) |
| 12 | 359** | June-Reg | Curtis Johnson | | P | 21 | 5/28/1978 | 6-0 | 170 | R | R | College | | University of California |
| 13 | 389** | June-Reg | Seth Morris | | OF | 18 | 8/25/1980 | 6-2 | 200 | R | R | A | | Hamilton High School (Hamilton,OH) |
| 14 | 419** | June-Reg | Brian Slocum | | P | 18 | 3/27/1981 | 6-4 | 190 | R | R | MLB | 2006-2006 | Iona Prep High School (New Rochelle,NY) |
| 15 | 449** | June-Reg | John Wilson | | C | 20 | 9/29/1978 | 6-1 | 210 | R | R | AAA | | University of Kentucky |
| 16 | 479 | June-Reg | Kevin West | | OF | 19 | 1/1/1980 | 6-2 | 195 | R | R | AAA | | Mendocino Junior College |
| 17 | 509** | June-Reg | John Larson | | P | | | | 0 | | | - | | Eastern Illinois University |
| 18 | 539 | June-Reg | Barry Quickstad | | OF | 18 | 7/20/1980 | 6-1 | 194 | L | R | A | | Waseca High School (Waseca,MN) |
| 19 | 569 | June-Reg | Paul Poplin | | P | | | | | | | Rookie | | University of North Carolina |
| 20 | 599 | June-Reg | Travis Bowyer | | P | 17 | 8/3/1981 | 6-3 | 212 | R | R | MLB | 2005-2005 | Liberty High School (Bedford,VA) |
| 21 | 629 | June-Reg | Chad Wandall | | | | | | | | | Rookie | | Auburn University |
| 22 | 659 | June-Reg | Ricky Manning | | OF | 18 | 11/18/1980 | 5-11 | 183 | L | L | A | | Edison High School (Fresno,CA) |
| 23 | 689 | June-Reg | Willie Eyre | | P | 20 | 7/21/1978 | 6-1 | 200 | R | R | MLB | 2006-2007 | Eastern Utah Community College |
| 24 | 719** | June-Reg | Danny Matienzo | | C | 18 | 9/3/1980 | 5-10 | 190 | R | R | AA | | Columbus High School (Miami,FL) |
| 25 | 749 | June-Reg | Craig Patterson | | C | | | | 0 | | | - | | California State University, Fullerton |
| 26 | 779 | June-Reg | Terry Tiffee | | IF | 20 | 4/21/1979 | 6-3 | 212 | B | R | MLB | 2004-2008 | Pratt Community College |
| 27 | 809 | June-Reg | Jess Turner | | P | 20 | 10/27/1978 | 6-2 | 190 | L | R | Ind | | Centralia College |
| 28 | 839 | June-Reg | Brad Weis | | | 21 | 11/29/1977 | 5-11 | 185 | L | L | AAA | | Auburn University |
| 29 | 869 | June-Reg | Sherwin Lockridge | | SS | | | | 0 | | | Rookie | | Florida A&M University |
| 30 | 899 | June-Reg | Matt Reed | | SS | 18 | 10/13/1980 | 5-11 | 155 | R | R | Rookie | | Haines City High School (Haines City,FL) |
| 31 | 929** | June-Reg | Ryan Miller | | P | 21 | 2/12/1978 | 6-1 | 200 | R | R | AA | | University of Evansville |
| 32 | 959** | June-Reg | Jeff Balser | | P | 18 | 12/31/1980 | 6-1 | 210 | R | R | A+ | | Venice High School (Venice,FL) |
| 33 | 989** | June-Reg | Billy Keppinger | | LF | 20 | 12/15/1978 | 6-0 | 195 | L | L | AA | | Lake City Community College |
| 34 | 1019 | June-Reg | John Thomman | | CF | 17 | 7/8/1981 | 6-4 | 212 | R | R | Rookie | | Levelland High School (Levelland,TX) |
| 35 | 1049 | June-Reg | Jason Richardson | | P | 19 | 6/11/1980 | 6-3 | 215 | R | R | AAA | | Polk Community College |
| 36 | 1079** | June-Reg | Joey Monahan | | IF | 18 | 1/14/1981 | 6-0 | 189 | R | R | A+ | | |
| 37 | 1109 | June-Reg | Digno Torres | | OF | 19 | 8/27/1979 | 6-4 | 190 | L | L | A+ | | Lake City Community College |
| 38 | 1139 | June-Reg | Scott Blackwell | | P | 19 | 11/26/1979 | 6-2 | 206 | R | R | A | | Lincoln Land Community College |
| 39 | 1169 | June-Reg | Beau Vaughan | | P | 18 | 6/4/1981 | 6-4 | 230 | B | R | AA | | |
| 40 | 1199 | June-Reg | Richard Smart | | P | 19 | 10/15/1979 | 6-4 | 190 | L | L | A | | Gulf Coast Community College |
| 41 | 1229 | June-Reg | Michael Stavey | | 1B | | | | 0 | | | - | | Eustis High School (Eustis,FL) |
| 42 | 1257 | June-Reg | Michael Wrenn | | C | 21 | 9/8/1977 | 6-1 | 185 | R | R | A | | Saint Leo University |
| 43 | 1284 | June-Reg | Bryan Williamson | | OF | | | | 0 | | | Rookie | | University of Washington |
| 44 | 1311 | June-Reg | Chuck Campbell | | P | | | | 0 | | | - | | |
| 45 | 1337** | June-Reg | Pat Neshek | | P | 18 | 9/4/1980 | 6-3 | 200 | B | R | MLB | 2006-2008 | Park Center High School (Brooklyn Park,MN) |
| 46 | 1362 | June-Reg | Maurice Powell | | P | 18 | 2/27/1981 | 5-11 | 170 | R | R | Rookie | | Upland High School (Upland,CA) |
| 47 | 1386** | June-Reg | Luke Field | | P | 20 | 1/27/1979 | 5-11 | 170 | R | R | AA | | Barton County Community College |
| 48 | 1410 | June-Reg | Casey Rauschenberger | | 3B | | | | 0 | | | - | | Oakland High School (Mufreesboro,TN) |
| 49 | 1434** | June-Reg | David Slevin | | 2B | 18 | 5/23/1981 | 5-10 | 170 | R | R | A- | | John Carroll High School (Fort Pierce,FL) |
| 50 | 1457 | June-Reg | Joseph Ammirato | | CF | | | | 0 | | | - | | Marina High School (Huntington Beach,CA) |
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