| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 12 | June-Reg | Adam Everett | $$ | SS | 21 | 2/2/1977 | 6-0 | 156 | R | R | MLB | 2001-2008 | University of South Carolina |
| 3 | 85 | June-Reg | Mike Maroth | | P | 20 | 8/17/1977 | 6-0 | 180 | L | L | MLB | 2002-2007 | University of Central Florida |
| 4 | 115 | June-Reg | Jerome Gamble | | P | 18 | 4/5/1980 | 6-2 | 202 | R | R | AA | | Benjamin Russell High School (Alexander City,AL) |
| 5 | 145 | June-Reg | Josh Hancock | | P | 20 | 4/11/1978 | 6-3 | 217 | R | R | MLB | 2002-2007 | |
| 6 | 175 | June-Reg | Richard Riccobono | | P | 18 | 1/3/1980 | 6-2 | 225 | R | R | A+ | | Commack High School (Commack,NY) |
| 7 | 205** | June-Reg | Keto Anderson | | 2B | 19 | 2/12/1979 | 5-11 | 180 | L | R | A | | Prattville High School (Prattville,AL) |
| 8 | 235 | June-Reg | Will Silverthorn | | P | 19 | 4/9/1979 | 6-1 | 190 | L | L | Rookie | | J.J. Pearce High School (Richardson,TX) |
| 9 | 265** | June-Reg | Mark Teixeira | | 3B | 18 | 4/11/1980 | 6-3 | 225 | B | R | MLB | 2003-2008 | Mount Saint Joseph High School (Baltimore,MD) |
| 10 | 295** | June-Reg | Lenny DiNardo | | P | 18 | 9/9/1979 | 6-4 | 190 | L | L | MLB | 2004-2008 | Santa Fe High School (Alachua,FL) |
| 11 | 325 | June-Reg | Carlos Rodriguez | | OF | 21 | 6/12/1977 | 6-1 | 227 | R | R | A+ | | |
| 12 | 355 | June-Reg | David Benham | | C | 22 | 10/12/1975 | 6-2 | 187 | R | R | AA | | Liberty University |
| 13 | 385** | June-Reg | Mike Rabelo | | C | 18 | 1/17/1980 | 6-1 | 200 | B | R | MLB | 2006-2008 | Ridgewood High School (New Port Richey,FL) |
| 14 | 415 | June-Reg | Matt Phillips | | | | | | | | | A | | University of Delaware |
| 15 | 445 | June-Reg | Lance Surridge | | P | 21 | 7/17/1976 | 6-4 | 200 | L | R | A+ | | University of North Carolina |
| 16 | 475 | June-Reg | Jason Norton | | P | 22 | 4/9/1976 | 6-3 | 205 | R | R | AA | | University of South Alabama |
| 17 | 505 | June-Reg | Benito Flores | | P | 22 | 1/24/1976 | 6-1 | 185 | L | L | A+ | | California State University, Fullerton |
| 18 | 535 | June-Reg | Terrance Hill | | P | 22 | 10/17/1975 | 5-10 | 170 | L | L | AA | | Southern University |
| 19 | 565 | June-Reg | Shon Norris | | P | 21 | 6/29/1977 | 6-2 | 185 | R | R | A- | | University of North Carolina |
| 20 | 595 | June-Reg | Tony James | | 2B | 22 | 5/16/1976 | 5-10 | 180 | R | R | A | | San Jose State University |
| 21 | 625 | June-Reg | Andrew Checketts | | | 22 | 10/8/1975 | 5-10 | 185 | R | R | Rookie | | Oregon State University |
| 22 | 655 | June-Reg | Thomas Linarelli | | P | 21 | 11/11/1976 | 6-3 | 210 | R | R | A- | | University of Washington |
| 23 | 685 | June-Reg | Drew Larned | | C | 22 | 11/13/1975 | 6-0 | 190 | R | R | AA | | Fairfield University |
| 24 | 715 | June-Reg | Josh Adeeb | | CF | 22 | 8/17/1975 | 6-1 | 190 | R | R | A- | | Vanderbilt University |
| 25 | 745 | June-Reg | John Hattig | | IF | 18 | 2/27/1980 | 6-2 | 215 | B | R | MLB | 2006-2006 | |
| 26 | 775** | June-Reg | Ben Kozlowski | | P | 17 | 8/16/1980 | 6-6 | 220 | L | L | MLB | 2002-2002 | Seminole High School (Seminole,FL) |
| 27 | 805** | June-Reg | David Gates | | RF | 17 | 9/23/1980 | 6-1 | 200 | R | R | AA | | Butler University |
| 28 | 835** | June-Reg | Jason Blanton | | P | 18 | 9/10/1979 | 6-4 | 235 | R | R | A+ | | Brevard Community College |
| 29 | 865 | June-Reg | Ryan Siebert | | P | | | | 0 | | | - | | Germantown W. (Memphis,AZ) |
| 30 | 895 | June-Reg | James Garcia | | P | 18 | 2/3/1980 | 6-0 | 210 | R | R | AAA | | West Torrance High School (Torrance,CA) |
| 31 | 925 | June-Reg | Robert Floyd | | P | | | | 0 | | | - | | Satsuma High School (Satsuma,AL) |
| 32 | 955 | June-Reg | Richard Hart | | 1B | 22 | 2/4/1976 | 6-0 | 220 | R | R | - | | Lubbock Christian High School (Lubbock,TX) |
| 33 | 985 | June-Reg | Heath Heiberger | | P | 18 | 6/20/1980 | 6-4 | 220 | L | L | A | | Putnam County High School (Granville,IL) |
| 34 | 1015 | June-Reg | Chadwick Johnson | | C | | | | 0 | | | A- | | Bradley University |
| 35 | 1045 | June-Reg | Mark Younk | | | | | | | | | College | | Texas High School (Texarkana,TX) |
| 36 | 1075 | June-Reg | Tonayne Brown | | OF | 20 | 8/24/1977 | 5-11 | 190 | R | L | AA | | Lurleen B. Wallace Community College |
| 37 | 1105 | June-Reg | Anthony Caridi | | C | | | | 0 | | | Rookie | | Klein High School (Klein,TX) |
| 38 | 1135 | June-Reg | Dennis Tankersley | | P | 19 | 2/24/1979 | 6-2 | 185 | R | R | MLB | 2002-2004 | Merrimack College |
| 39 | 1165 | June-Reg | Rob Shabansky | | P | 21 | 2/27/1977 | 5-10 | 180 | L | L | A+ | | University of Arizona |
| 40 | 1195 | June-Reg | Philip Ledesma | | OF | 23 | 3/14/1975 | 5-11 | 175 | R | R | A- | | Rider University |
| 41 | 1225** | June-Reg | Jason Fingers | | | 19 | 8/17/1978 | 6-5 | 180 | R | R | A | | Central Arizona College |
| 42 | 1255 | June-Reg | Bryan Barnowski | | DH | 17 | 9/3/1980 | 6-2 | 205 | R | R | A | | Southwick High School (Southwick,MA) |
| 43 | 1283 | June-Reg | Ronald Bohinski | | SS | | | | 0 | | | - | | Lakeland High School (Lakeland,FL) |
| 44 | 1309 | June-Reg | John Parrado | | | | | | | | | College | | Miami Lakes High School (Hialeah,FL) |
| 45 | 1333 | June-Reg | Jonathan Smithers | | 3B | | | | 0 | | | - | | Florida Junior College |
| 46 | 1356 | June-Reg | Chris Hart | | | 18 | 9/21/1979 | 6-1 | 190 | B | R | College | | Clearwater High School (Clearwater,FL) |
| 47 | 1378 | June-Reg | Richie Smith | | | | | 5-11 | 200 | L | R | College | | Liberty County High School (Bristol,FL) |
| 48 | 1399 | June-Reg | Darry Burgess | | P | | | | 0 | | | - | | Alvin High School (Alvin,TX) |
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