| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 2 | 52 | June-Reg | Matt Belisle | | P | 18 | 6/6/1980 | 6-3 | 195 | R | R | MLB | 2003-2008 | McCallum High School (Austin,TX) |
| 3 | 101 | June-Reg | Ryan Langerhans | | OF | 18 | 2/20/1980 | 6-3 | 195 | L | L | MLB | 2002-2008 | Round Rock High School (Round Rock,TX) |
| 4 | 131 | June-Reg | Johnny McGinnis | | P | 18 | 9/23/1979 | 6-3 | 208 | R | R | A- | | Dacula High School (Dacula,GA) |
| 5 | 161 | June-Reg | Damien Jones | | OF | 18 | 7/10/1979 | 6-2 | 200 | L | L | AA | | Vigor High School (Prichard,AL) |
| 6 | 191** | June-Reg | Victor Menocal | | SS | 18 | 8/7/1979 | 6-4 | 215 | R | R | A | | Bishop Kenny High School (Jacksonville,FL) |
| 7 | 221 | June-Reg | Scott Sobkowiak | | P | 20 | 10/26/1977 | 6-5 | 230 | R | R | MLB | 2001-2001 | Northern Illinois University |
| 8 | 251** | June-Reg | Josh Karp | | P | 18 | 9/21/1979 | 6-5 | 210 | R | R | AAA | | Bothell High School (Bothell,WA) |
| 9 | 281 | June-Reg | Matt Targac | | P | 18 | 6/25/1980 | 6-3 | 210 | B | L | Rookie | | Sacred Heart University |
| 10 | 311** | June-Reg | Charles Bilezikjian | | OF | 17 | 11/12/1980 | 5-11 | 180 | R | R | A | | Port Richmond High School (Staten Island,NY) |
| 11 | 341 | June-Reg | L.J. Yankosky | | P | | | | | | | AAA | | Georgia Tech |
| 12 | 371 | June-Reg | Greg Donato | | OF | 17 | 11/10/1980 | 6-0 | 180 | R | R | A | | Clovis High School (Clovis,CA) |
| 13 | 401** | June-Reg | Steve Smyth | | P | 20 | 6/3/1978 | 6-1 | 220 | L | L | MLB | 2002-2002 | Cypress College |
| 14 | 431 | June-Reg | John Ennis | | P | 18 | 10/17/1979 | 6-5 | 220 | R | R | MLB | 2002-2007 | Monroe High School (Sepulveda,CA) |
| 15 | 461 | June-Reg | Tommy Clark | | | 18 | 12/21/1979 | 6-2 | 205 | R | R | Rookie | | Brunswick High School (Brunswick,GA) |
| 16 | 491** | June-Reg | Rob Moravek | | | 18 | 2/20/1980 | 6-4 | 205 | R | R | Rookie | | Simsbury High School (Simsbury,CT) |
| 17 | 521 | June-Reg | Daniel Curtis | | P | 18 | 11/3/1979 | 6-3 | 215 | R | R | AAA | | Central High School (Chattanooga,TN) |
| 18 | 551 | June-Reg | Colin Stewart | | OF | 21 | 9/2/1976 | 6-1 | 185 | R | R | A+ | | Sonoma State University |
| 19 | 581 | June-Reg | Zack Frachiseur | | | 21 | 9/30/1976 | 6-0 | 190 | R | R | AAA | | University of Georgia |
| 20 | 611 | June-Reg | Gregg Maluchnik | | C | 21 | 9/14/1976 | 6-3 | 200 | R | R | A | | Duke University |
| 21 | 641 | June-Reg | Aaron Garmong | | P | 22 | 6/3/1976 | 5-11 | 180 | L | L | A- | | Wayne State College (Nebraska) |
| 22 | 671 | June-Reg | Sean Bischofberger | | C | 19 | 2/6/1979 | 6-4 | 230 | R | R | Ind | | Granite Hills High School (El Cajon,CA) |
| 23 | 701 | June-Reg | Jason Mikels | | P | 18 | 7/27/1979 | 6-4 | 185 | R | R | A | | Rio Linda High School (Rio Linda,CA) |
| 24 | 731 | June-Reg | Derrick Truitt | | P | 20 | 2/2/1978 | 6-1 | 170 | R | R | A+ | | Columbia State Community College |
| 25 | 761** | June-Reg | Kregg Jarvais | | C | 21 | 12/25/1976 | 6-2 | 215 | R | R | A | | University of Maine-Orono |
| 26 | 791 | June-Reg | Joseph Cox | | OF | | | | 0 | | | - | | Florida State University |
| 27 | 821 | June-Reg | Bubba Scarce | | P | 21 | 9/30/1976 | 5-11 | 188 | R | R | A | | University of North Carolina |
| 28 | 851 | June-Reg | Louis Angulo | | P | | | | 0 | | | - | | Miami-Dade College |
| 29 | 881 | June-Reg | Tim Spooneybarger | | P | 18 | 10/21/1979 | 6-3 | 190 | R | R | MLB | 2001-2003 | Pine Forest High School (Pensacola,FL) |
| 30 | 911 | June-Reg | Drew James | | C | 21 | 7/1/1976 | 5-10 | 215 | R | R | A | | Southeastern |
| 31 | 941 | June-Reg | Tim Lemke | | | | | | | | | College | | Immaculata High School (Somerville,NJ) |
| 32 | 971** | June-Reg | Nick Green | | 2B | 19 | 9/10/1978 | 6-0 | 180 | R | R | MLB | 2004-2007 | DeKalb Junior College |
| 33 | 1001 | June-Reg | Derek Clifton | | P | 18 | 1/7/1980 | 6-3 | 185 | R | R | A- | | Clear Creek High School (League City,TX) |
| 34 | 1031 | June-Reg | Paul Burke | | C | 20 | 9/2/1977 | 6-2 | 200 | R | R | A- | | Bellarmine University |
| 35 | 1061 | June-Reg | Marcus Hambrick | | OF | 19 | 6/19/1979 | 5-11 | 170 | L | L | A- | | Robert E. Lee High School (Montgomery,AL) |
| 36 | 1091** | June-Reg | Phil Rosengren | | P | 21 | 2/10/1977 | 6-5 | 210 | R | R | A | | Northwestern University |
| 37 | 1121 | June-Reg | Adrian Walker | | P | | | | 0 | | | Rookie | | Mission Bay High School (San Diego,CA) |
| 38 | 1151 | June-Reg | Kevin Benson | | OF | | | | 0 | | | - | | Century High School (Bismarck,ND) |
| 39 | 1181 | June-Reg | Casey Cheshier | | 3B | 21 | 7/13/1976 | 6-3 | 190 | R | R | A- | | San Jose State University |
| 40 | 1211 | June-Reg | Jerry Simmons | | OF | 22 | 6/4/1976 | 6-0 | 195 | R | R | AA | | The Citadel |
| 41 | 1241 | June-Reg | Mike Perez | | P | 33 | 10/19/1964 | 6-0 | 187 | R | R | MLB | 1990-1997 | Palm Beach High School (West Palm Beach,FL) |
| 42 | 1270 | June-Reg | Eric Wise | | P | 18 | 6/29/1980 | 6-2 | 185 | R | R | Rookie | | Basic High School (Henderson,NV) |
| 43 | 1298 | June-Reg | Gregory Birch | | | | | | | | | College | | McArthur High School (Hollywood,FL) |
| 44 | 1323** | June-Reg | Dallas McPherson | | IF | 17 | 7/23/1980 | 6-4 | 210 | L | R | MLB | 2004-2006 | Randleman High School (Randleman,NC) |
| 45 | 1348 | June-Reg | Brad Voyles | | P | 21 | 12/30/1976 | 6-0 | 195 | R | R | MLB | 2001-2003 | Luxemburg-Casco High School (Luxemburg,WI) |
| 46 | 1370** | June-Reg | Josh Carter | | OF | 17 | 11/5/1980 | 6-2 | 210 | R | R | AA | - | Fallbrook High School (Fallbrook,CA) |
| 47 | 1391** | June-Reg | Mike Gleason | | P | | | | 0 | | | - | | Santa Fe Trail High School (Carbondale,KS) |
| 48 | 1411 | June-Reg | Jason King | | SS | 18 | 1/20/1980 | 6-0 | 175 | R | R | Rookie | | Englewood High School (Jacksonville,FL) |
| 49 | 1428 | June-Reg | Micah Noda | | | | | | | | | College | | Columbia High School (Lake City,FL) |
| 50 | 1443 | June-Reg | Shaun Harper | | OF | 18 | 3/30/1980 | 6-1 | 175 | R | R | A- | | Frederick Douglass High School (Atlanta,GA) |
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