| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 16 | June-Reg | Lance Berkman | $$ | 1B | 21 | 2/10/1976 | 6-1 | 205 | B | L | MLB | 1999-2008 | Rice University |
| 2 | 68 | June-Reg | Camron Hahn | | C | 18 | 12/20/1978 | 6-2 | 200 | R | R | Rookie | | Male High School (Louisville,KY) |
| 3 | 100 | June-Reg | Scott Barrett | | P | 18 | 11/18/1978 | 5-10 | 175 | L | L | A- | | Mayde Creek High School (Houston,TX) |
| 4 | 130** | June-Reg | Eric Byrnes | | OF | 21 | 2/16/1976 | 6-2 | 205 | R | R | MLB | 2000-2008 | UCLA |
| 5 | 160 | June-Reg | Derek Stanford | | P | 18 | 9/6/1978 | 6-2 | 190 | R | R | A | | Temple High School (Temple,TX) |
| 6 | 190 | June-Reg | Joe Messman | | P | 21 | 7/29/1975 | 6-2 | 175 | R | R | AA | | Oregon State University |
| 7 | 220 | June-Reg | Bobby Bystrowski | | OF | 20 | 9/27/1976 | 6-1 | 190 | R | R | A+ | | Sacramento City College |
| 8 | 250 | June-Reg | Ryan Dunn | | OF | 20 | 7/4/1976 | 6-2 | 200 | L | R | A- | | Texas Christian University |
| 9 | 280 | June-Reg | Don Thomas | | P | 21 | 12/20/1975 | 6-2 | 170 | L | L | A+ | | Kennesaw State University |
| 10 | 310 | June-Reg | Scott Fredericks | | P | | | | | | | - | | Saguaro High School (Scottsdale,AZ) |
| 11 | 340** | June-Reg | Javier Pamus | | P | 22 | 2/11/1975 | 6-1 | 195 | R | R | AA | | San Jose State University |
| 12 | 370 | June-Reg | Peter Sullivan | | p | 22 | 9/10/1974 | 6-5 | 225 | R | R | A- | | Limestone College |
| 13 | 400 | June-Reg | Bart Leahy | | OF | 20 | 10/19/1976 | 6-5 | 225 | R | R | A- | | Ohio University |
| 14 | 430** | June-Reg | Trey Hodges | | p | 19 | 6/29/1978 | 6-3 | 187 | R | R | MLB | 2002-2003 | Blinn College |
| 15 | 460 | June-Reg | J.J. Thomas | | 1B | 21 | 9/18/1975 | 6-4 | 215 | R | R | A+ | | Georgia Tech |
| 16 | 490 | June-Reg | Jim Wallace | | p | 21 | 10/13/1975 | 6-4 | 195 | R | R | A+ | | University of North Carolina |
| 17 | 520 | June-Reg | Pat Cutshall | | SS | 22 | 10/29/1974 | 5-9 | 175 | R | R | A | | Mercyhurst College |
| 18 | 550 | June-Reg | Simon Mitchell | | OF | | | | | | | - | | West Seattle High School (Seattle,WA) |
| 19 | 580 | June-Reg | Brian Hecht | | p | 19 | 11/29/1977 | 6-4 | 205 | R | R | A | | University of Illinois |
| 20 | 610 | June-Reg | Tim Redding | | p | 19 | 2/12/1978 | 6-0 | 215 | R | R | MLB | 2001-2008 | Monroe Community College |
| 21 | 640 | June-Reg | Neal Maybin | | OF | | | | | | | Rookie | | Lake Howell High School (Winter Park,FL) |
| 22 | 670 | June-Reg | Jason Alfaro | | p | 19 | 11/29/1977 | 5-10 | 189 | R | R | MLB | 2004-2004 | Hill College |
| 23 | 700 | June-Reg | Kyle Logan | | OF-3B | 21 | 7/11/1975 | 6-0 | 202 | L | R | AAA | | University of Southern Mississippi |
| 24 | 730 | June-Reg | Tim Judd | | p | | | | | | | - | | Dixon High School (Dixon,CA) |
| 25 | 760** | June-Reg | Charlton Jimerson | | OF | 17 | 9/22/1979 | 6-3 | 205 | R | R | MLB | 2005-2008 | Mount Eden High School (Hayward,CA) |
| 26 | 790 | June-Reg | Jared Wood | | p | | | | | | | - | | St. Louis Community College-Meramec |
| 27 | 820** | June-Reg | Derek Brewster | | p | 18 | 12/8/1978 | 5-11 | 220 | R | R | A- | | |
| 28 | 850 | June-Reg | Graham Travis | | p | | | | | | | - | | Ballard High School (Seattle,WA) |
| 29 | 880 | June-Reg | Joe Cathey | | SS | 21 | 3/2/1976 | 5-9 | 175 | B | R | A | | Rice University |
| 30 | 910 | June-Reg | Christian Ross | | p | 18 | 3/12/1979 | 6-3 | 200 | R | R | Rookie | | Ringgold High School (Ringgold,GA) |
| 31 | 940** | June-Reg | Kris Clute | | SS | 18 | 4/20/1979 | 5-9 | 175 | R | R | AA | | Miami Killian High School (Miami,FL) |
| 32 | 970 | June-Reg | Eric Ambruster | | 1B | | | | | | | - | | Kalamazoo Central High School (Kalamazoo,MI) |
| 33 | 1000** | June-Reg | Lamont Matthews | | Of | 19 | 6/15/1978 | 6-2 | 210 | L | L | AAA | | Kishwaukee Community College |
| 34 | 1030** | June-Reg | John Skinner | | p | 20 | 6/15/1977 | 6-1 | 185 | R | R | AA | | Chabot College |
| 35 | 1060 | June-Reg | Kevin Marzion | | p | | | | | | | College | | Elk Grove High School (Elk Grove,CA) |
| 36 | 1090 | June-Reg | Jason Dill | | 1B | 18 | 9/22/1978 | 6-1 | 200 | L | L | A+ | - | Charlotte High School (Punta Gorda,FL) |
| 37 | 1120** | June-Reg | Jerymane Beasley | | Of | | | | 0 | | | - | | Olympic (Wash ) Junior College |
| 38 | 1150 | June-Reg | John Colon | | p | | | | | | | - | | Molokai High School (Hoolehua,HI) |
| 39 | 1180 | June-Reg | Marcos Rios | | C | | | | | | | - | | Chabot College |
| 40 | 1210 | June-Reg | Garreth Perry | | C | | | | | | | - | | Service High School (Anchorage,AK) |
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