| Rnd | Ovl | Phase | Player Name | $$ | Pos | Age | Born | Ht | Wt | B | T | High Level | MLB Years | Drafted From |
| 1 | 27 | June-Reg | A.J. Zapp | $$ | 1B | 18 | 4/24/1978 | 6-3 | 190 | L | R | AAA | | |
| 1 | 35 | June-Reg | Jason Marquis | $$ | P | 17 | 8/21/1978 | 6-1 | 185 | L | R | MLB | 2000-2008 | Tottenville High School (Staten Island,NY) |
| 2 | 62** | June-Reg | Eric Munson | | OF | 18 | 10/3/1977 | 6-3 | 220 | L | R | MLB | 2000-2007 | Mount Carmel High School (San Diego,CA) |
| 3 | 92 | June-Reg | Junior Brignac | | OF | 18 | 2/15/1978 | 6-3 | 175 | R | R | AA | | Cleveland High School (Reseda,CA) |
| 4 | 122 | June-Reg | Joe Nelson | | P | 21 | 10/25/1974 | 6-2 | 185 | R | R | MLB | 2001-2006 | University of San Francisco |
| 5 | 152 | June-Reg | Josh Pugh | | C | 18 | 9/10/1977 | 6-0 | 200 | R | R | A+ | | Henry Clay High School (Lexington,KY) |
| 6 | 182 | June-Reg | Shawn Onley | | P | 21 | 9/10/1974 | 6-5 | 190 | R | R | A+ | | Rice University |
| 7 | 212 | June-Reg | Mark DeRosa | | 3B | 21 | 2/2/1975 | 6-1 | 190 | R | R | MLB | 1998-2008 | University of Pennsylvania |
| 8 | 242 | June-Reg | A.D. Thorpe | | SS | 19 | 6/19/1977 | 5-11 | 160 | B | R | A | | Southern High School (Durham,NC) |
| 9 | 272 | June-Reg | Nathan Harden | | P | 18 | 1/13/1978 | 6-2 | 185 | R | R | Rookie | | Dripping Springs High School (Dripping Springs,TX) |
| 10 | 302 | June-Reg | Winston Lee | | P | 19 | 8/17/1976 | 6-5 | 210 | R | R | Rookie | | Glendale Community College (CA) |
| 11 | 332 | June-Reg | Aaron Taylor | | P | 18 | 8/20/1977 | 6-5 | 205 | R | R | MLB | 2002-2004 | |
| 12 | 362 | June-Reg | Greg Ward | | OF | 18 | 4/8/1978 | 6-5 | 215 | R | R | A+ | | Avon High School (Avon,CT) |
| 13 | 392 | June-Reg | Jason Ross | | OF | 22 | 6/10/1974 | 6-4 | 215 | R | R | AAA | | University of Hawaii-Manoa |
| 14 | 422 | June-Reg | John Arkire | | p | | | | | | | - | | University of Tennessee |
| 15 | 452 | June-Reg | Mike Hessman | | 1B-p | 18 | 3/5/1978 | 6-5 | 215 | R | R | MLB | 2003-2007 | Mater Dei High School (Santa Ana,CA) |
| 16 | 482 | June-Reg | Ray Beasley | | p | 19 | 10/26/1976 | 5-11 | 168 | R | L | AAA | | Lake City Community College |
| 17 | 512 | June-Reg | Dana Davis | | p | | | | | | | - | | Rice University |
| 18 | 542 | June-Reg | Donald Ceasar | | p | 17 | 10/25/1978 | 6-6 | 197 | R | R | Rookie | | Lake Charles High School (Lake Charles,LA) |
| 19 | 572 | June-Reg | Adam Milburn | | p | 22 | 4/27/1974 | 6-1 | 195 | R | L | AA | | University of Kentucky |
| 20 | 602 | June-Reg | John Arnold | | C | 21 | 2/12/1975 | 6-0 | 185 | R | R | A | | Eastern New Mexico University |
| 21 | 632 | June-Reg | Jesse Crespo | | C | 18 | 9/18/1977 | 6-3 | 200 | R | R | Rookie | | |
| 22 | 662** | June-Reg | Aaron Melebeck | | SS | 18 | 1/5/1978 | 5-11 | 175 | R | R | A- | | Clear Brook High School (Friendswood,TX) |
| 23 | 692 | June-Reg | Dax Norris | | C | 23 | 1/14/1973 | 5-10 | 190 | R | R | AAA | | University of Alabama |
| 24 | 722** | June-Reg | Pat Collins | | p | 18 | 3/3/1978 | 6-5 | 230 | R | R | AA | | Union High School (Union,NJ) |
| 25 | 752 | June-Reg | Anthony Brooks | | SS | 19 | 1/25/1977 | 6-0 | 195 | R | R | A | | Gulf Coast Community College |
| 26 | 782 | June-Reg | Jason Katz | | SS | 22 | 10/7/1973 | 5-10 | 180 | B | R | AA | | New Mexico Junior College |
| 27 | 812 | June-Reg | Aaron Strangfeld | | 1B | 18 | 10/27/1977 | 6-1 | 215 | B | R | A- | | Grossmont College |
| 28 | 842 | June-Reg | Miguel Garcia | | p | | | | | | | - | | Cerritos College |
| 29 | 872 | June-Reg | Galen Reeder | | p | 18 | 2/14/1978 | 6-2 | 194 | L | L | Rookie | | DeKalb Junior College |
| 30 | 902 | June-Reg | Fred Sanchez | | SS | | | | | | | - | | Burbank High School (Burbank,CA) |
| 31 | 932 | June-Reg | Adam Love | | p | | | | | | | - | | Westlake High School (Austin,TX) |
| 32 | 962** | June-Reg | Dustin Franklin | | p | | | | | | | - | | Permian High School (Odessa,TX) |
| 33 | 992 | June-Reg | Jerrod Wong | | 1B | 22 | 5/29/1974 | 6-3 | 200 | L | L | A+ | | Gonzaga University |
| 34 | 1022 | June-Reg | Adam Springston | | p | 18 | 9/7/1977 | 6-6 | 228 | R | R | A- | | Oxnard College |
| 35 | 1052 | June-Reg | Byron Embry | | p | 19 | 9/5/1976 | 6-2 | 240 | R | R | AAA | | Indian Hills Community College-Centerville |
| 36 | 1082 | June-Reg | Scott Frawley | | Of | 18 | 9/7/1977 | 6-1 | 205 | R | R | Rookie | | South Suburban College |
| 37 | 1112 | June-Reg | Hunter Wenzel | | p | | | | | | | - | | Boerne High School (Boerne,TX) |
| 38 | 1142 | June-Reg | Randy Phillips | | p | 19 | 7/21/1976 | 6-2 | 180 | L | L | Rookie | | Olney Central College |
| 39 | 1172 | June-Reg | Jeff Lindemann | | p | 18 | 4/13/1978 | 6-4 | 185 | R | R | Rookie | | Victor J. Andrew High School (Tinley Park,IL) |
| 40 | 1202 | June-Reg | Anthony Barrow | | 1B | | | | | | | - | | Blazer High School (Ashland,KY) |
| 41 | 1230 | June-Reg | Justin Willoughby | | p | 18 | 4/9/1978 | 6-3 | 170 | L | L | AAA | | Princeton High School (Princeton,NC) |
| 42 | 1258 | June-Reg | George Snead | | p | 22 | 1/30/1974 | 6-3 | 210 | R | R | A | | Albany State University (Georgia) |
| 43 | 1285 | June-Reg | Cory Simpson | | p | 18 | 2/1/1978 | 6-5 | 215 | R | R | A | | Sumner High School (Kentwood,LA) |
| 44 | 1311 | June-Reg | Nathan Fernley | | p | 19 | 1/13/1977 | 6-3 | 160 | R | R | A+ | | Long Beach City College |
| 45 | 1336 | June-Reg | John Zydowsky | | SS | 18 | 4/18/1978 | 5-11 | 170 | R | R | Rookie | | Portage High School (Pardeeville,WI) |
| 46 | 1361 | June-Reg | Joe Holzbauer | | p | 18 | 4/27/1978 | 6-2 | 185 | R | R | Rookie | | Palomar College |
| 47 | 1385 | June-Reg | Patrick Fuentes | | SS | | | | | | | - | | James Logan High School (Union City,CA) |
| 48 | 1408** | June-Reg | Greg Dukeman | | p | 17 | 12/6/1978 | 6-8 | 238 | R | R | A+ | | Millikan High School (Long Beach,CA) |
| 49 | 1431 | June-Reg | Michael Jones | | p | 23 | 8/9/1972 | 6-0 | 187 | B | R | A+ | | University of California-Riverside |
| 50 | 1454 | June-Reg | Travis Richo | | of | | | | | | | - | | Fernandina Beach High School (Fernandina Beach,FL) |
| 51 | 1475** | June-Reg | Daniel Bell | | of | | | | | | | - | | University High School (Los Angeles,CA) |
| 52 | 1494 | June-Reg | Brett Pierce | | SS | | | | | | | A- | | Citrus Junior College |
| 53 | 1511 | June-Reg | Marcus Giles | | 2B | 18 | 5/18/1978 | 5-8 | 180 | R | R | MLB | 2001-2007 | Granite Hills High School (El Cajon,CA) |
| 54 | 1527 | June-Reg | Jeff Champion | | of | 20 | 4/16/1976 | 6-3 | 215 | R | R | Rookie | | Florida Memorial College |
| 55 | 1543** | June-Reg | Adam Johnson | | of | 16 | 7/12/1979 | 6-2 | 210 | R | R | MLB | 2001-2003 | University of Central Florida |
| 56 | 1558 | June-Reg | Bradley Green | | SS | | | | | | | - | | South Pittsburg High School (Pittsburg,TN) |
| 57 | 1569 | June-Reg | Juan Galban | | p | | | | | | | - | | |
| 58 | 1579 | June-Reg | Baylor Moore | | p | | | | | | | - | | Friendswood High School (Friendswood,TX) |
| 59 | 1589 | June-Reg | Hector Gonzales | | C | | | | | | | - | | Scottsdale Community College |
| 60 | 1598** | June-Reg | Ray Plummer | | p | 20 | 11/1/1975 | 5-11 | 190 | L | L | A | | Point Loma Nazarene University (Calif.) |
| |